Literature DB >> 25152542

Nucleic Acid Nanostructures: Bottom-Up Control of Geometry on the Nanoscale.

Nadrian C Seeman1, Philip S Lukeman1.   

Abstract

DNA may seem an unlikely molecule from which to build nanostructures, but this is not correct. The specificity of interaction that enables DNA to function so successfully as genetic material also enables its use as a smart molecule for construction on the nanoscale. The key to using DNA for this purpose is the design of stable branched molecules, which expand its ability to interact specifically with other nucleic acid molecules. The same interactions used by genetic engineers can be used to make cohesive interactions with other DNA molecules that lead to a variety of new species. Branched DNA molecules are easy to design, and the can assume a variety of structural motifs. These can be used for purposes both of specific construction, such as polyhedra, and for the assembly of topological targets. A variety of two-dimensional periodic arrays with specific patterns have been made. DNA nanomechanical devices have been built with a series of different triggers, small molecules, nucleic acid molecules and proteins. Recently, progress has been made in self-replication of DNA nano-constructs, and in the scaffolding of other species into DNA arrangements.

Keywords:  Branched DNA; DNA devices; DNA periodic arrays; DNA polyhedra; DNA scaffolding; atomic force microscopy; self-assembly; unusual DNA motifs

Year:  2005        PMID: 25152542      PMCID: PMC4141725          DOI: 10.1088/0034-4885/68/1/R05

Source DB:  PubMed          Journal:  Rep Prog Phys        ISSN: 0034-4885


  62 in total

1.  DNA nanotechnology: Chemical copying of connectivity.

Authors:  Lars Henning Eckardt; Kai Naumann; Wolf Matthias Pankau; Michael Rein; Markus Schweitzer; Norbert Windhab; Günter von Kiedrowski
Journal:  Nature       Date:  2002-11-21       Impact factor: 49.962

2.  Nylon/DNA: Single-stranded DNA with a covalently stitched nylon lining.

Authors:  Lei Zhu; Philip S Lukeman; James W Canary; Nadrian C Seeman
Journal:  J Am Chem Soc       Date:  2003-08-27       Impact factor: 15.419

Review 3.  The developments of semisynthetic DNA-protein conjugates.

Authors:  Christof M Niemeyer
Journal:  Trends Biotechnol       Date:  2002-09       Impact factor: 19.536

4.  A two-state DNA lattice switched by DNA nanoactuator.

Authors:  Liping Feng; Sung Ha Park; John H Reif; Hao Yan
Journal:  Angew Chem Int Ed Engl       Date:  2003-09-22       Impact factor: 15.336

5.  Pseudohexagonal 2D DNA crystals from double crossover cohesion.

Authors:  Baoquan Ding; Ruojie Sha; Nadrian C Seeman
Journal:  J Am Chem Soc       Date:  2004-08-25       Impact factor: 15.419

6.  Sequence-specific recognition of double helical nucleic acids by proteins.

Authors:  N C Seeman; J M Rosenberg; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1976-03       Impact factor: 11.205

Review 7.  Construction of three-dimensional stick figures from branched DNA.

Authors:  N C Seeman
Journal:  DNA Cell Biol       Date:  1991-09       Impact factor: 3.311

Review 8.  Flexibility of DNA.

Authors:  P J Hagerman
Journal:  Annu Rev Biophys Biophys Chem       Date:  1988

9.  Construction of biologically functional bacterial plasmids in vitro.

Authors:  S N Cohen; A C Chang; H W Boyer; R B Helling
Journal:  Proc Natl Acad Sci U S A       Date:  1973-11       Impact factor: 11.205

10.  Estimation of molecular radius, free mobility, and valence using polyacylamide gel electrophoresis.

Authors:  D Rodbard; A Chrambach
Journal:  Anal Biochem       Date:  1971-03       Impact factor: 3.365

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  30 in total

1.  Operation of a DNA robot arm inserted into a 2D DNA crystalline substrate.

Authors:  Baoquan Ding; Nadrian C Seeman
Journal:  Science       Date:  2006-12-08       Impact factor: 47.728

Review 2.  Nanotechnology approaches for gene transfer.

Authors:  Karin E Lundin; Oscar E Simonson; Pedro M D Moreno; Eman M Zaghloul; Iulian I Oprea; Mathias G Svahn; C I Edvard Smith
Journal:  Genetica       Date:  2009-06-02       Impact factor: 1.082

3.  DNA as membrane-bound ligand-receptor pairs: duplex stability is tuned by intermembrane forces.

Authors:  Paul A Beales; T Kyle Vanderlick
Journal:  Biophys J       Date:  2009-02-18       Impact factor: 4.033

Review 4.  Creation of functional micro/nano systems through top-down and bottom-up approaches.

Authors:  Tak-Sing Wong; Branden Brough; Chih-Ming Ho
Journal:  Mol Cell Biomech       Date:  2009-03

5.  Stamped microbattery electrodes based on self-assembled M13 viruses.

Authors:  Ki Tae Nam; Ryan Wartena; Pil J Yoo; Forrest W Liau; Yun Jung Lee; Yet-Ming Chiang; Paula T Hammond; Angela M Belcher
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-27       Impact factor: 11.205

6.  Studies of thermal stability of multivalent DNA hybridization in a nanostructured system.

Authors:  Jeanette Nangreave; Hao Yan; Yan Liu
Journal:  Biophys J       Date:  2009-07-22       Impact factor: 4.033

7.  Assembly and characterization of 8-arm and 12-arm DNA branched junctions.

Authors:  Xing Wang; Nadrian C Seeman
Journal:  J Am Chem Soc       Date:  2007-06-12       Impact factor: 15.419

Review 8.  Biomolecular engineering for nanobio/bionanotechnology.

Authors:  Teruyuki Nagamune
Journal:  Nano Converg       Date:  2017-04-24

9.  A proximity-based programmable DNA nanoscale assembly line.

Authors:  Hongzhou Gu; Jie Chao; Shou-Jun Xiao; Nadrian C Seeman
Journal:  Nature       Date:  2010-05-13       Impact factor: 49.962

10.  Dynamic patterning programmed by DNA tiles captured on a DNA origami substrate.

Authors:  Hongzhou Gu; Jie Chao; Shou-Jun Xiao; Nadrian C Seeman
Journal:  Nat Nanotechnol       Date:  2009-02-15       Impact factor: 39.213

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