Literature DB >> 25148702

HIV-1 Tat membrane interactions probed using X-ray and neutron scattering, CD spectroscopy and MD simulations.

Kiyotaka Akabori1, Kun Huang2, Bradley W Treece1, Michael S Jablin1, Brian Maranville3, Arthur Woll4, John F Nagle1, Angel E Garcia2, Stephanie Tristram-Nagle5.   

Abstract

We report the effect on lipid bilayers of the Tat peptide Y47GRKKRRQRRR57 from the HIV-1 virus transactivator of translation (Tat) protein. Synergistic use of low-angle X-ray scattering (LAXS) and atomistic molecular dynamic simulations (MD) indicate Tat peptide binding to neutral dioleoylphosphocholine (DOPC) lipid headgroups. This binding induced the local lipid phosphate groups to move 3Å closer to the center of the bilayer. Many of the positively charged guanidinium components of the arginines were as close to the center of the bilayer as the locally thinned lipid phosphate groups. LAXS data for DOPC, DOPC/dioleoylphosphoethanolamine (DOPE), DOPC/dioleoylphosphoserine (DOPS), and a mimic of the nuclear membrane gave similar results. Generally, the Tat peptide decreased the bilayer bending modulus KC and increased the area/lipid. Further indications that Tat softens a membrane, thereby facilitating translocation, were provided by wide-angle X-ray scattering (WAXS) and neutron scattering. CD spectroscopy was also applied to further characterize Tat/membrane interactions. Although a mechanism for translation remains obscure, this study suggests that the peptide/lipid interaction makes the Tat peptide poised to translocate from the headgroup region.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Lipid bilayer structure cell-penetrating peptide; Low-angle X-ray scattering (LAXS); Membrane pore; Molecular dynamics (MD) simulations; Peptide translocation; Wide-angle X-ray scattering (WAXS)

Year:  2014        PMID: 25148702      PMCID: PMC4610132          DOI: 10.1016/j.bbamem.2014.08.014

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  72 in total

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Authors:  Ian M Kaplan; Jehangir S Wadia; Steven F Dowdy
Journal:  J Control Release       Date:  2005-01-20       Impact factor: 9.776

2.  Structural studies of HIV-1 Tat protein.

Authors:  P Bayer; M Kraft; A Ejchart; M Westendorp; R Frank; P Rösch
Journal:  J Mol Biol       Date:  1995-04-07       Impact factor: 5.469

3.  Cellular uptake of unconjugated TAT peptide involves clathrin-dependent endocytosis and heparan sulfate receptors.

Authors:  Jean Philippe Richard; Kamran Melikov; Hilary Brooks; Paul Prevot; Bernard Lebleu; Leonid V Chernomordik
Journal:  J Biol Chem       Date:  2005-02-01       Impact factor: 5.157

4.  Mechanism of alamethicin insertion into lipid bilayers.

Authors:  K He; S J Ludtke; W T Heller; H W Huang
Journal:  Biophys J       Date:  1996-11       Impact factor: 4.033

5.  Structure and elasticity of lipid membranes with genistein and daidzein bioflavinoids using X-ray scattering and MD simulations.

Authors:  Mohit Raghunathan; Yuriy Zubovski; Richard M Venable; Richard W Pastor; John F Nagle; Stephanie Tristram-Nagle
Journal:  J Phys Chem B       Date:  2012-02-29       Impact factor: 2.991

6.  No entry for TAT(44-57) into liposomes and intact MDCK cells: novel approach to study membrane permeation of cell-penetrating peptides.

Authors:  S D Krämer; H Wunderli-Allenspach
Journal:  Biochim Biophys Acta       Date:  2003-01-31

7.  Assessing atomistic and coarse-grained force fields for protein-lipid interactions: the formidable challenge of an ionizable side chain in a membrane.

Authors:  Igor Vorobyov; Libo Li; Toby W Allen
Journal:  J Phys Chem B       Date:  2008-07-18       Impact factor: 2.991

8.  Solvation energies of amino acid side chains and backbone in a family of host-guest pentapeptides.

Authors:  W C Wimley; T P Creamer; S H White
Journal:  Biochemistry       Date:  1996-04-23       Impact factor: 3.162

Review 9.  Transcellular protein transduction using the Tat protein of HIV-1.

Authors:  Antonio Fittipaldi; Mauro Giacca
Journal:  Adv Drug Deliv Rev       Date:  2005-01-25       Impact factor: 15.470

10.  Derivation and systematic validation of a refined all-atom force field for phosphatidylcholine lipids.

Authors:  Joakim P M Jämbeck; Alexander P Lyubartsev
Journal:  J Phys Chem B       Date:  2012-03-01       Impact factor: 2.991

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  11 in total

1.  Characterization of Lipid-Protein Interactions and Lipid-Mediated Modulation of Membrane Protein Function through Molecular Simulation.

Authors:  Melanie P Muller; Tao Jiang; Chang Sun; Muyun Lihan; Shashank Pant; Paween Mahinthichaichan; Anda Trifan; Emad Tajkhorshid
Journal:  Chem Rev       Date:  2019-04-12       Impact factor: 60.622

2.  HIV-1 matrix-31 membrane binding peptide interacts differently with membranes containing PS vs. PI(4,5)P2.

Authors:  Lauren O'Neil; Kathryn Andenoro; Isabella Pagano; Laura Carroll; Leah Langer; Zachary Dell; Davina Perera; Bradley W Treece; Frank Heinrich; Mathias Lösche; John F Nagle; Stephanie Tristram-Nagle
Journal:  Biochim Biophys Acta       Date:  2016-09-15

3.  Exosome-associated release, uptake, and neurotoxicity of HIV-1 Tat protein.

Authors:  Pejman Rahimian; Johnny J He
Journal:  J Neurovirol       Date:  2016-05-12       Impact factor: 2.643

4.  Emerging Diversity in Lipid-Protein Interactions.

Authors:  Valentina Corradi; Besian I Sejdiu; Haydee Mesa-Galloso; Haleh Abdizadeh; Sergei Yu Noskov; Siewert J Marrink; D Peter Tieleman
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5.  Elastic behavior of model membranes with antimicrobial peptides depends on lipid specificity and d-enantiomers.

Authors:  Akari Kumagai; Fernando G Dupuy; Zoran Arsov; Yasmene Elhady; Diamond Moody; Robert K Ernst; Berthony Deslouches; Ronald C Montelaro; Y Peter Di; Stephanie Tristram-Nagle
Journal:  Soft Matter       Date:  2019-02-20       Impact factor: 3.679

Review 6.  Membrane remodeling and mechanics: Experiments and simulations of α-Synuclein.

Authors:  Ana West; Benjamin E Brummel; Anthony R Braun; Elizabeth Rhoades; Jonathan N Sachs
Journal:  Biochim Biophys Acta       Date:  2016-03-10

7.  Changes in membrane elasticity caused by the hydrophobic surfactant proteins correlate poorly with adsorption of lipid vesicles.

Authors:  Ryan W Loney; Bret Brandner; Maayan P Dagan; Paige N Smith; Megan Roche; Jonathan R Fritz; Stephen B Hall; Stephanie A Tristram-Nagle
Journal:  Soft Matter       Date:  2021-02-25       Impact factor: 3.679

Review 8.  Membrane Active Peptides and Their Biophysical Characterization.

Authors:  Fatma Gizem Avci; Berna Sariyar Akbulut; Elif Ozkirimli
Journal:  Biomolecules       Date:  2018-08-22

9.  Penetration of HIV-1 Tat47-57 into PC/PE Bilayers Assessed by MD Simulation and X-ray Scattering.

Authors:  Chris Neale; Kun Huang; Angel E García; Stephanie Tristram-Nagle
Journal:  Membranes (Basel)       Date:  2015-09-22

Review 10.  Biophysical approaches for exploring lipopeptide-lipid interactions.

Authors:  Sathishkumar Munusamy; Renaud Conde; Brandt Bertrand; Carlos Munoz-Garay
Journal:  Biochimie       Date:  2020-01-21       Impact factor: 4.079

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