Literature DB >> 19435330

Evaluation of MP2, DFT, and DFT-D methods for the prediction of infrared spectra of peptides.

Yves Bouteiller1, Jean Christophe Poully, Charles Desfrançois, Gilles Grégoire.   

Abstract

The prediction accuracy of second-order Moller-Plesset theory MP2 and density functional theory DFT-(D) with and without empirical dispersion correction within the resolution of identity approximation (ri) have been investigated for the assignment of infrared spectra of gas-phase peptides. A training set of 17 conformers of phenylalanine containing capped peptides have been used to establish mode-specific local scaling factors. Inclusion of dispersion terms at the DFT level turns to significantly improve the accuracy of predicted IR spectra. At the DFT-D level, the nonhybrid generalized gradient approximation functional B97-D (TZVP basis set) provides even better results than the popular hybrid functional B3LYP (6-31+G* basis set) while reducing the computational cost by almost 1 order of magnitude. Besides, MP2 (SVP basis set) outperforms all other tested methods in terms of reliability and transferability to larger molecular systems with typical prediction errors of about 5 cm(-1).

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Year:  2009        PMID: 19435330     DOI: 10.1021/jp901570r

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  2 in total

1.  Accuracy of density functionals in the description of dispersion interactions and IR spectra of phosphates and phosphorylated compounds.

Authors:  Ashwani Sharma; Gilles Ohanessian; Carine Clavaguéra
Journal:  J Mol Model       Date:  2014-08-22       Impact factor: 1.810

2.  Structure of sodiated octa-glycine: IRMPD spectroscopy and molecular modeling.

Authors:  David Semrouni; O Petru Balaj; Florent Calvo; Catarina F Correia; Carine Clavaguéra; Gilles Ohanessian
Journal:  J Am Soc Mass Spectrom       Date:  2010-02-01       Impact factor: 3.109

  2 in total

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