| Literature DB >> 25146150 |
Sébastien Salas1, Carine Jiguet-Jiglaire, Loic Campion, Catherine Bartoli, Frédéric Frassineti, Jean-Laurent Deville, André Maues De Paula, Fabien Forest, Pascal Jézéquel, Jean-Claude Gentet, Corinne Bouvier.
Abstract
BACKGROUND: The standard therapy regimen of conventional osteosarcoma includes neoadjuvant chemotherapy followed by surgical resection and postoperative chemotherapy. The percentage of necrotic tissue following induction chemotherapy is assessed by using the Huvos grading system, which classifies patients as "poor responders" (PR) and "good responders" (GR). The aim of this study was to identify molecular markers expressed differentially between good and poor responders to neoadjuvant chemotherapy in order to predict the response to chemotherapy in conventional osteosarcomas before beginning treatment.Entities:
Mesh:
Substances:
Year: 2014 PMID: 25146150 PMCID: PMC4150966 DOI: 10.1186/1471-2407-14-606
Source DB: PubMed Journal: BMC Cancer ISSN: 1471-2407 Impact factor: 4.430
Clinicopathological characteristics of the 9 patients studied by SSH
| Good responders | Poor responders | |
|---|---|---|
| Number of patients | 5 | 4 |
| Mean age at diagnosis [95% IC] (years) | 14 [5-17] | 13.5 [13-16] |
| Sex | ||
| Male | 3 | 2 |
| Female | 2 | 2 |
| Tumor location | ||
| Upper limb | 2 | 1 |
| Lower limb | 3 | 3 |
| Histological subtype | ||
| Osteoblastic | 4 | 3 |
| Osteoblastic and chondroblastic | 1 | 1 |
| Mean tumor size [95% IC] (cm) | 12.5 [8-34] | 9 [6.7-25] |
| Mean viable residual tumor cells [95% IC] (%) | 2.5 [1-4.5] | 25 [17-37] |
Description of oligonucleotides and sequence parameters for QRT-PCR
| Name gene | Oligo direct | Oligo reverse | PCR conditions | Cycle number | GeneInfo identifier |
|---|---|---|---|---|---|
|
| CTACCACATCCAAGGAAGGCA | TTTTTCGTCACTACCTCCCCG | 95°C 15 sec | 35 | 124517659 |
| 67°C 30 sec | |||||
|
| CTAAAGCCCTCCAACCTGCT | CAGCCCACAGACCAGATGT | 95°C 15 sec | 45 | 158138506 |
| 60°C 30 sec | |||||
|
| AAAGTCAGGTTGCTGGTCAAA | TGCCGTTGTTGGATTCTTC | 95°C 15 sec | 45 | 76253927 |
| 60°C 30 sec |
Clinicopathological characteristics of the 52 patients studied by IHC including those studied by SSH and QRT-PCR
| Whole cohort | |
|---|---|
| Number of patients | 52 |
| Age | |
| Mean age at diagnosis [95% IC]a (years) | 17.4 [5;80] |
| Sex | |
| Male (%) | 34 (65.4) |
| Female (%) | 18 (34.6) |
| Histologic response | |
| Good responders | 24 |
| Poor responders | 28 |
| Histological diagnosis and subtype | |
| High-grade osteosarcomas of central “conventional” type | 52 |
| Osteoblastic (%) | 38 (73) |
| Chondroblastic (%) | 5 (9.5) |
| Telangiectasic (%) | 3 (6) |
| Fibroblastic (%) | 2 (4) |
| Mixed subtypeb (%) | 4 (7.5) |
aConfidence Interval, for the whole cohort, to ascertain that the screening cohort is a representative subset of the whole.
bOsteoblastic and chondroblastic or fibroblastic.
Identification of genes differentially expressed by SSH in PR
| Gene title | Gene symbol | Chromosomal location |
|---|---|---|
| Actin, alpha 1, skeletal muscle | ACTA1 | chr1q42.13-q42.2 |
| Actin, beta | ACTB | chr7p15-p12 |
| Actin, gamma 1 | ACTG1 | chr17q25 |
| Actinin, alpha 1 | ACTN1 | chr14q24.1-q24.2|14q24|14q22-q24 |
| ADAM metallopeptidase with thrombospondin type 1 motif, 20 | ADAMTS20 | chr12q12 |
| v-akt murine thymoma viral oncogene homolog 2 | AKT2 | chr19q13.1-q13.2 |
| Ankyrin repeat domain 11 | ANKRD11 | chr16q24.3 |
| Annexin A2 | ANXA2 | chr15q21-q22 |
| AT rich interactive domain 4B (RBP1-like) | ARID4B | chr1q42.1-q43 |
| Actin-related protein 2/3 complex, subunit 2, 34 kDa | ARPC2 | chr2q36.1 |
| ATPase family, AAA domain containing 3A | ATAD3A | chr1p36.33 |
| ATP synthase, H + transporting, mitochondrial F0 complex, subunit E///major facilitator superfamily domain containing 7 | ATP5I///MFSD7 | chr4p16.3 |
| Bromo adjacent homology domain containing 1 | BAHD1 | chr15q15.1 |
| Breast carcinoma amplified sequence 3 | BCAS3 | chr17q23 |
| Branched chain aminotransferase 2, mitochondrial | BCAT2 | chr19q13 |
| Chromosome 14 open reading frame 112 | C14orf112 | chr14q24.2 |
| Chromosome 14 open reading frame 2 | C14orf2 | chr14q32.33 |
| Chromosome 20 open reading frame 194 | C20orf194 | chr20p13 |
| Cell adhesion molecule 1 | CADM1 | chr11q23.2 |
| Coiled-coil domain containing 28B | CCDC28B | chr1p35.1 |
| Chaperonin containing TCP1, subunit 8 (theta) | CCT8 | chr21q22.11 |
| Cell division cycle 34 homolog (S. cerevisiae) | CDC34 | chr19p13.3 |
| Cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4) | CDKN2C | chr1p32 |
| Carbohydrate (chondroitin 4) sulfotransferase 11 | CHST11 | chr12q |
| Creatine kinase, brain | CKB | chr14q32 |
| CDC28 protein kinase regulatory subunit 1B | CKS1B | chr1q21.2 |
| CLPTM1-like | CLPTM1L | chr5pter-p15.3 |
| Cornifelin | CNFN | chr19q13.2 |
| Collagen, type V, alpha 1 | COL5A1 | chr9q34.2-q34.3 |
| Catechol-O-methyltransferase | COMT | chr22q11.21-q11.23|22q11.21 |
| Cytochrome c oxidase subunit VIa polypeptide 1 | COX6A1 | chr12q24.2|12q24.2 |
| Cytokine receptor-like factor 1 | CRLF1 | chr19p12 |
| Chondroitin sulfate glucuronyltransferase | CSGlcA-T | chr7q36.1 |
| Casein kinase 2, alpha prime polypeptide | CSNK2A2 | chr16q21 |
| cutA divalent cation tolerance homolog (E. coli) | CUTA | chr6pter-p21.31 |
| dodecenoyl-Coenzyme A delta isomerase (3,2 trans-enoyl-Coenzyme A isomerase) | DCI | chr16p13.3 |
| Dicarbonyl/L-xylulose reductase | DCXR | chr17q25.3 |
| DEAD (Asp-Glu-Ala-As) box polypeptide 19A | DDX19A | chr16q22.1 |
| DEAD (Asp-Glu-Ala-As) box polypeptide 19B///DEAD (Asp-Glu-Ala-As) box polypeptide 19A | DDX19A///DDX19B | chr16q22.1 |
| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 | DDX39 | chr19p13.12 |
| Eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein) | EEF1D | chr8q24.3 |
| Eukaryotic elongation factor-2 kinase | EEF2K | chr16p12.1 |
| Eukaryotic translation initiation factor 3, subunit H | EIF3H | chr8q24.11 |
| Eukaryotic translation initiation factor 4 gamma, 3 | EIF4G3 | chr1p36.12 |
| Fas apoptotic inhibitory molecule 3 | FAIM3 | chr1q32.1 |
| FK506 binding protein 7 | FKBP7 | chr2q31.2 |
| Kappa-actin | FKSG30 | chr2q21.1 |
| Flavin containing monooxygenase 5 | FMO5 | chr1q21.1 |
| Fibronectin 1 | FN1 | chr2q34 |
| FERM domain containing 5 | FRMD5 | chr15q15.3 |
| Golgi SNAP receptor complex member 2 | GOSR2 | chr17q21 |
| Glypican 1 | GPC1 | chr2q35-q37 |
| G protein-coupled receptor 108 | GPR108 | chr19p13.3 |
| Ribosomal protein L23a///similar to ribosomal protein L23A///ribosomal protein L23a-like | hCG_16001///hCG_2001000///RPL23A | chr17q11///chr17q23.2///chr3q26.1 |
| v-Ha-ras Harvey rat sarcoma viral oncogene homolog | HRAS | chr11p15.5 |
| Heparan sulfate proteoglycan 2 | HSPG2 | chr1p36.1-p34 |
| Insulin-like growth factor 2 mRNA binding protein 3 | IGF2BP3 | chr7p11 |
| Inositol(myo)-1(or 4)-monophosphatase 2 | IMPA2 | chr18p11.2 |
| Integrator complex subunit 1 | INTS1 | chr7p22.3 |
| Importin 11 | IPO11 | chr5q12.1 |
| Jumonji domain containing 2C | JMJD2C | chr9p24.1 |
| KIAA0999 protein | KIAA0999 | chr11q23.3 |
| Laminin, alpha 4 | LAMA4 | chr6q21 |
| Lectin, galactoside-binding, soluble, 1 (galectin 1) | LGALS1 | chr22q13.1 |
| Lamin A/C | LMNA | chr1q21.2-q21.3 |
| Ribosomal protein S16///similar to 40S ribosomal protein S16 | LOC441876///RPS16 | chr19q13.1///chr1p36.21 |
| Leucine-rich repeat containing 28 | LRRC28 | chr15q26.3 |
| Microtubule-associated protein 1S | MAP1S | chr19p13.11 |
| Mitogen-activated protein kinase 3 | MAPK3 (ERK1) | chr16p11.2 |
| Major facilitator superfamily domain containing 5 | MFSD5 | chr12q13.13 |
| Mitochondrial ribosomal protein S7 | MRPS7 | chr17q25 |
| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4, 9 kDa | NDUFA4 | chr7p21.3 |
| NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20 kDa (NADH-coenzyme Q reductase) | NDUFS7 | chr19p13.3 |
| NADH dehydrogenase (ubiquinone) flavoprotein 1, 51 kDa | NDUFV1 | chr11q13 |
| Nuclear factor I/C (CCAAT-binding transcription factor) | NFIC | chr19p13.3 |
| NOL1/NOP2/Sun domain family, member 5 | NSUN5 | chr7q11.23 |
| NOL1/NOP2/Sun domain family, member 5B | NSUN5B | chr7q11.23 |
| NOL1/NOP2/Sun domain family, member 5C | NSUN5C | chr7q11.23 |
| Nucleoporin 214 kDa | NUP214 | chr9q34.1 |
| Nucleoporin 85 kDa | NUP85 | chr17q25.1 |
| PDZ domain containing 2 | PDZD2 | chr5p13.3 |
| Periplakin | PPL | chr16p13.3 |
| Protein phosphatase 1, regulatory (inhibitor) subunit 12B | PPP1R12B | chr1q32.1 |
| Protein phosphatase 2 (formerly 2A), regulatory subunit A, alpha isoform | PPP2R1A | chr19q13.33 |
| Protein kinase C substrate 80 K-H | PRKCSH | chr19p13.2 |
| Protein arginine methyltransferase 2 | PRMT2 | chr21q22.3 |
| RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse)) | RALY | chr20q11.21-q11.23 |
| RNA binding motif protein 4 | RBM4 | chr11q13 |
| RNA binding motif protein 4B | RBM4B | chr11q13 |
| RNA binding motif protein 8A | RBM8A | chr1q12 |
| Ribosomal protein L13 | RPL13 | chr16q24.3|17p11.2 |
| Ribosomal protein L13a | RPL13A | chr19q13.3 |
| Ribosomal protein L19 | RPL19 | chr17q11.2-q12 |
| Ribosomal protein L23a | RPL23A | chr17q11 |
| Ribosomal protein L31 | RPL31 | chr2q11.2 |
| Ribosomal protein, large, P1 | RPLP1 | chr15q22 |
| Ribosomal protein S12 | RPS12 | chr6q23.2 |
| Ribosomal protein S14 | RPS14 | chr5q31-q33 |
| Ribosomal protein S17 | RPS17 | chr15q |
| Ribosomal protein S21 | RPS21 | chr20q13.3 |
| Ribosomal protein S27 (metallopanstimulin 1) | RPS27 | chr1q21 |
| Ribosomal protein S6 | RPS6 | chr9p21 |
| RNA pseudouridylate synthase domain containing 4 | RPUSD4 | chr11q24.2 |
| Ribosomal RNA processing 1 homolog B (S. cerevisiae) | RRP1B | chr21q22.3 |
| Retinoid X receptor, alpha | RXRA | chr9q34.3 |
| Synaptonemal complex protein SC65 | SC65 | chr17q21.2 |
| Splicing factor, arginine/serine-rich 3 | SFRS3 | chr6p21 |
| Serine hydroxymethyltransferase 2 (mitochondrial) | SHMT2 | chr12q12-q14 |
| SIVA1, apoptosis-inducing factor | SIVA1 | chr14q32.33 |
| SIVA1, apoptosis-inducing factor | SIVA1 | chr14q32.33 |
| Solute carrier family 16, member 8 (monocarboxylic acid transporter 3) | SLC16A8 | chr22q12.3-q13.2 |
| Solute carrier family 20 (phosphate transporter), member 2 | SLC20A2 | chr8p12-p11 |
| Small nuclear ribonucleoprotein D3 polypeptide 18 kDa | SNRPD3 | chr22q11.23 |
| Signal transducer and activator of transcription 3 (acute-phase response factor) | STAT3 | chr17q21.31 |
| Serine/threonine kinase 24 (STE20 homolog, yeast) | STK24 | chr13q31.2-q32.3 |
| T-cell, immune regulator 1, ATPase, H + transporting, lysosomal V0 subunit A3 | TCIRG1 | chr11q13.2 |
| Testis-specific kinase 1 | TESK1 | chr9p13 |
| Thymosin, beta 10 | TMSB10 | chr2p11.2 |
| Transportin 3 | TNPO3 | chr7q32.1 |
| Tetraspanin 9 | TSPAN9 | chr12p13.33-p13.32 |
| Ubiquitin A-52 residue ribosomal protein fusion product 1 | UBA52 | chr19p13.1-p12 |
| Vacuolar protein sorting 28 homolog (S. cerevisiae) | VPS28 | chr8q24.3 |
| Williams-Beuren syndrome chromosome region 16 | WBSCR16 | chr7q11.23 |
| WW domain containing oxidoreductase | WWOX | chr16q23.3-q24.1 |
| X antigen family, member 1D///X antigen family, member 1C///X antigen family, member 1E///X antigen family, member 1///X antigen family, member 1B | XAGE1///XAGE1B///XAGE1C///XAGE1D///XAGE1E | chrXp11.22 |
| Zinc finger protein 449 | ZNF449 | chrXq26.3 |
Figure 1RTQ-PCR analysis of STAT3 and ERK1 genes. A: Quantification of STAT3 mRNA with 18S rRNA reference gene transcript confirmed higher STAT3 mRNA levels in poor responder (PR) samples compared with good responder (GR) samples (p = 0.019). B: Quantification of MAPK3 (ERK1) mRNA with 18S rRNA reference gene transcript confirmed higher MAPK3 (ERK1) mRNA levels in PR samples compared with GR samples (p = 0.046).
Figure 2IHC pSTAT3 scores. Score 0: negative staining (X200). Score 1: >50% of nuclei are labeled with low staining intensity (X200). Score 2: <50% cells with moderate staining intensity and <25% of cells are highly stained (X200). Score 3: more than 50% of nuclei are stained with moderate staining intensity (X200).
Correlation between phosphorylated STAT3 and ERK1 IHC expression to poor response to chemotherapy for a percentage of viable residual cells ≤10%
| IHC score | Good responders | Poor responders | p-value | |
|---|---|---|---|---|
| Phosphorylated STAT3 | 0 or 1 | 16 | 9 | 0.036 |
| 2 or 3 | 6 | 14 | ||
| VPP(PR) = 14/20 = 70%/VPN(GR) = 16/25 = 64% | ||||
| Phosphorylated ERK1 | 0 or 1 | 17 | 8 | 0.007 |
| 2 or 3 | 5 | 15 | ||
| VPP(PR) = 15/20 = 75%/VPN(GR) = 17/25 = 68% | ||||
| Phosphorylated STAT3 and ERK1 | Both 0-1 | 12 | 4 | 0.003 |
| Intermediate | 8 | 7 | ||
| Both 2-3 | 1 | 10 | ||
| VPP(both/PR) = 10/11 = 91%/VPN(both/GR) = 12/16 = 75% | ||||
Correlation between phosphorylated STAT3 and ERK1 IHC expression to poor response to chemotherapy for a percentage of viable residual cells lower than 5%
| IHC score | Good responders | Poor responders | p-value | |
|---|---|---|---|---|
| Phosphorylated STAT3 | 0 or 1 | 13 | 12 | 0.013 |
| 2 or 3 | 3 | 17 | ||
| VPP(PR) = 17/20 = 85%/VPN(GR) = 13/25 = 52% | ||||
| Phosphorylated ERK1 | 0 or 1 | 13 | 12 | 0.035 |
| 2 or 3 | 4 | 16 | ||
| VPP(PR) = 16/20 = 80%/VPN(GR) = 13/25 = 52% | ||||
| Phosphorylated STAT3 and ERK1 | Both 0-1 | 11 | 5 | 0.007 |
| Intermediate | 5 | 10 | ||
| Both 2-3 | 1 | 10 | ||
| VPP(both/PR) = 10/11 = 91%/VPN(both/GR) = 11/16 = 69% | ||||