Literature DB >> 25136112

Automodification switches PARP-1 function from chromatin architectural protein to histone chaperone.

Uma M Muthurajan1, Maggie R D Hepler1, Aaron R Hieb2, Nicholas J Clark1, Michael Kramer1, Tingting Yao1, Karolin Luger3.   

Abstract

Poly [ADP-ribose] polymerase 1 (PARP-1) is a highly abundant chromatin-associated enzyme. It catalyzes the NAD(+)-dependent polymerization of long chains of poly-ADP ribose (PAR) onto itself in response to DNA damage and other cues. More recently, the enzymatic activity of PARP-1 has also been implicated in the regulation of gene expression. The molecular basis for the functional switch from chromatin architectural protein to transcription factor and DNA damage responder, triggered by PARP-1 automodification, is unknown. Here, we show that unmodified PARP-1 engages in at least two high-affinity binding modes with chromatin, one of which does not involve free DNA ends, consistent with its role as a chromatin architectural protein. Automodification reduces PARP-1 affinity for intact chromatin but not for nucleosomes with exposed DNA ends. Automodified (AM) PARP-1 has the ability to sequester histones (both in vitro and in cells) and to assemble nucleosomes efficiently in vitro. This unanticipated nucleosome assembly activity of AM-PARP-1, coupled with the fast turnover of the modification, suggests a model in which DNA damage or transcription events trigger transient histone chaperone activity.

Entities:  

Keywords:  HI-FI FRET; dissociation constant; linker DNA; posttranslational modification

Mesh:

Substances:

Year:  2014        PMID: 25136112      PMCID: PMC4156740          DOI: 10.1073/pnas.1405005111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

1.  Effect of poly(ADP-ribosyl)ation and Mg2+ ions on chromatin structure revealed by scanning force microscopy.

Authors:  M d'Erme; G Yang; E Sheagly; F Palitti; C Bustamante
Journal:  Biochemistry       Date:  2001-09-18       Impact factor: 3.162

2.  Functional analysis of nucleosome assembly protein, NAP-1. The negatively charged COOH-terminal region is not necessary for the intrinsic assembly activity.

Authors:  T Fujii-Nakata; Y Ishimi; A Okuda; A Kikuchi
Journal:  J Biol Chem       Date:  1992-10-15       Impact factor: 5.157

3.  NAD+-dependent modulation of chromatin structure and transcription by nucleosome binding properties of PARP-1.

Authors:  Mi Young Kim; Steven Mauro; Nicolas Gévry; John T Lis; W Lee Kraus
Journal:  Cell       Date:  2004-12-17       Impact factor: 41.582

Review 4.  PARPs and the DNA damage response.

Authors:  Fabricio G Sousa; Renata Matuo; Daniele G Soares; Alexandre E Escargueil; João A P Henriques; Annette K Larsen; Jenifer Saffi
Journal:  Carcinogenesis       Date:  2012-03-19       Impact factor: 4.944

5.  Release of core DNA from nucleosomal core particles following (ADP-ribose)n-modification in vitro.

Authors:  G Mathis; F R Althaus
Journal:  Biochem Biophys Res Commun       Date:  1987-03-30       Impact factor: 3.575

6.  Crystal structures of poly(ADP-ribose) polymerase-1 (PARP-1) zinc fingers bound to DNA: structural and functional insights into DNA-dependent PARP-1 activity.

Authors:  Marie-France Langelier; Jamie L Planck; Swati Roy; John M Pascal
Journal:  J Biol Chem       Date:  2011-01-13       Impact factor: 5.157

7.  Histone ADP-ribosylation facilitates gene transcription by directly remodeling nucleosomes.

Authors:  Ricardo Martinez-Zamudio; Hyo Chol Ha
Journal:  Mol Cell Biol       Date:  2012-04-30       Impact factor: 4.272

8.  The histone chaperone Nap1 promotes nucleosome assembly by eliminating nonnucleosomal histone DNA interactions.

Authors:  Andrew J Andrews; Xu Chen; Alexander Zevin; Laurie A Stargell; Karolin Luger
Journal:  Mol Cell       Date:  2010-03-26       Impact factor: 17.970

9.  The DNA binding and catalytic domains of poly(ADP-ribose) polymerase 1 cooperate in the regulation of chromatin structure and transcription.

Authors:  David A Wacker; Donald D Ruhl; Ehsan H Balagamwala; Kristine M Hope; Tong Zhang; W Lee Kraus
Journal:  Mol Cell Biol       Date:  2007-09-04       Impact factor: 4.272

10.  Poly(ADP-ribosyl)ation of polynucleosomes causes relaxation of chromatin structure.

Authors:  G G Poirier; G de Murcia; J Jongstra-Bilen; C Niedergang; P Mandel
Journal:  Proc Natl Acad Sci U S A       Date:  1982-06       Impact factor: 11.205

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  66 in total

Review 1.  The right place at the right time: chaperoning core histone variants.

Authors:  Francesca Mattiroli; Sheena D'Arcy; Karolin Luger
Journal:  EMBO Rep       Date:  2015-10-12       Impact factor: 8.807

2.  Catalytic-Independent Functions of PARP-1 Determine Sox2 Pioneer Activity at Intractable Genomic Loci.

Authors:  Ziying Liu; W Lee Kraus
Journal:  Mol Cell       Date:  2017-02-16       Impact factor: 17.970

Review 3.  Fly Fishing for Histones: Catch and Release by Histone Chaperone Intrinsically Disordered Regions and Acidic Stretches.

Authors:  Christopher Warren; David Shechter
Journal:  J Mol Biol       Date:  2017-06-10       Impact factor: 5.469

4.  Q-FADD: A Mechanistic Approach for Modeling the Accumulation of Proteins at Sites of DNA Damage.

Authors:  Jyothi Mahadevan; Johannes Rudolph; Asmita Jha; Jian Wei Tay; Joseph Dragavon; Erik M Grumstrup; Karolin Luger
Journal:  Biophys J       Date:  2019-05-03       Impact factor: 4.033

5.  Mechanism-Based Drug Combinations with the DNA Strand-Breaking Nucleoside Analog CNDAC.

Authors:  Xiaojun Liu; Yingjun Jiang; Billie Nowak; Sarah Hargis; William Plunkett
Journal:  Mol Cancer Ther       Date:  2016-07-29       Impact factor: 6.261

6.  PARP1 changes from three-dimensional DNA damage searching to one-dimensional diffusion after auto-PARylation or in the presence of APE1.

Authors:  Lili Liu; Muwen Kong; Natalie R Gassman; Bret D Freudenthal; Rajendra Prasad; Stephanie Zhen; Simon C Watkins; Samuel H Wilson; Bennett Van Houten
Journal:  Nucleic Acids Res       Date:  2017-12-15       Impact factor: 16.971

7.  Identification of Protein Substrates of Specific PARP Enzymes Using Analog-Sensitive PARP Mutants and a "Clickable" NAD+ Analog.

Authors:  Bryan A Gibson; W Lee Kraus
Journal:  Methods Mol Biol       Date:  2017

8.  Biochemical and Biophysical Methods for Analysis of Poly(ADP-Ribose) Polymerase 1 and Its Interactions with Chromatin.

Authors:  Maggie H Chassé; Uma M Muthurajan; Nicholas J Clark; Michael A Kramer; Srinivas Chakravarthy; Thomas Irving; Karolin Luger
Journal:  Methods Mol Biol       Date:  2017

9.  Assessment of PARP protein expression in epithelial ovarian cancer by ELISA pharmacodynamic assay and immunohistochemistry.

Authors:  K Veskimäe; S Staff; A Grönholm; M Pesu; M Laaksonen; M Nykter; J Isola; J Mäenpää
Journal:  Tumour Biol       Date:  2016-05-07

10.  Poly(ADP-Ribose) Polymerase 1 Promotes the Human Heat Shock Response by Facilitating Heat Shock Transcription Factor 1 Binding to DNA.

Authors:  Mitsuaki Fujimoto; Ryosuke Takii; Arpit Katiyar; Pratibha Srivastava; Akira Nakai
Journal:  Mol Cell Biol       Date:  2018-06-14       Impact factor: 4.272

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