Literature DB >> 25133456

Metadata checklist: identification of CHI3L1 and MASP2 as a biomarker pair for liver cancer through integrative secretome and transcriptome analysis.

Wenchao Ding1, Qingchong Qiu, Guanfeng Liu, Jie Liu, Ruifang Mao, Biaoyang Lin.   

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Year:  2014        PMID： 25133456      PMCID： PMC4175428          DOI： 10.1089/omi.2014.0090

Source DB:  PubMed          Journal:  OMICS        ISSN： 1536-2310


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  3 in total

Review 1.  Ready to put metadata on the post-2015 development agenda? Linking data publications to responsible innovation and science diplomacy.

Authors:  Vural Özdemir; Eugene Kolker; Peter J Hotez; Sophie Mohin; Barbara Prainsack; Brian Wynne; Effy Vayena; Yavuz Coşkun; Türkay Dereli; Farah Huzair; Alexander Borda-Rodriguez; Nicola Luigi Bragazzi; Jack Faris; Raj Ramesar; Ambroise Wonkam; Collet Dandara; Bipin Nair; Adrián Llerena; Koray Kılıç; Rekha Jain; Panga Jaipal Reddy; Kishore Gollapalli; Sanjeeva Srivastava; Ilona Kickbusch
Journal:  OMICS       Date:  2014-01

2.  Toward more transparent and reproducible omics studies through a common metadata checklist and data publications.

Authors:  Eugene Kolker; Vural Özdemir; Lennart Martens; William Hancock; Gordon Anderson; Nathaniel Anderson; Sukru Aynacioglu; Ancha Baranova; Shawn R Campagna; Rui Chen; John Choiniere; Stephen P Dearth; Wu-Chun Feng; Lynnette Ferguson; Geoffrey Fox; Dmitrij Frishman; Robert Grossman; Allison Heath; Roger Higdon; Mara H Hutz; Imre Janko; Lihua Jiang; Sanjay Joshi; Alexander Kel; Joseph W Kemnitz; Isaac S Kohane; Natali Kolker; Doron Lancet; Elaine Lee; Weizhong Li; Andrey Lisitsa; Adrian Llerena; Courtney Macnealy-Koch; Jean-Claude Marshall; Paola Masuzzo; Amanda May; George Mias; Matthew Monroe; Elizabeth Montague; Sean Mooney; Alexey Nesvizhskii; Santosh Noronha; Gilbert Omenn; Harsha Rajasimha; Preveen Ramamoorthy; Jerry Sheehan; Larry Smarr; Charles V Smith; Todd Smith; Michael Snyder; Srikanth Rapole; Sanjeeva Srivastava; Larissa Stanberry; Elizabeth Stewart; Stefano Toppo; Peter Uetz; Kenneth Verheggen; Brynn H Voy; Louise Warnich; Steven W Wilhelm; Gregory Yandl
Journal:  OMICS       Date:  2014-01

3.  MOPED 2.5--an integrated multi-omics resource: multi-omics profiling expression database now includes transcriptomics data.

Authors:  Elizabeth Montague; Larissa Stanberry; Roger Higdon; Imre Janko; Elaine Lee; Nathaniel Anderson; John Choiniere; Elizabeth Stewart; Gregory Yandl; William Broomall; Natali Kolker; Eugene Kolker
Journal:  OMICS       Date:  2014-06
  3 in total
  6 in total

1.  CHI3L1 promotes tumor progression by activating TGF-β signaling pathway in hepatocellular carcinoma.

Authors:  Qing-Chong Qiu; Lin Wang; Shan-Shan Jin; Guan-Feng Liu; Jie Liu; Liang Ma; Rui-Fang Mao; Ying-Ying Ma; Na Zhao; Ming Chen; Biao-Yang Lin
Journal:  Sci Rep       Date:  2018-10-09       Impact factor: 4.379

2.  MOPED: Model Organism Protein Expression Database.

Authors:  Eugene Kolker; Roger Higdon; Winston Haynes; Dean Welch; William Broomall; Doron Lancet; Larissa Stanberry; Natali Kolker
Journal:  Nucleic Acids Res       Date:  2011-12-01       Impact factor: 16.971

3.  A new risk model comprising genes highly correlated with CD133 identifies different tumor-immune microenvironment subtypes impacting prognosis in hepatocellular carcinoma.

Authors:  Huajian Yu; Xiaoqiang Zhu; Hechun Lin; Hongyu Pan; Fangyu Zhao; Miaoxin Zhu; Lei Sun; Wenjun Chai; Ming Yao; Mingxia Yan
Journal:  Aging (Albany NY)       Date:  2020-06-20       Impact factor: 5.682

Review 4.  "Complimenting the Complement": Mechanistic Insights and Opportunities for Therapeutics in Hepatocellular Carcinoma.

Authors:  Astha Malik; Unmesha Thanekar; Surya Amarachintha; Reena Mourya; Shreya Nalluri; Alexander Bondoc; Pranavkumar Shivakumar
Journal:  Front Oncol       Date:  2021-02-24       Impact factor: 5.738

5.  A compatible exon-exon junction database for the identification of exon skipping events using tandem mass spectrum data.

Authors:  Fan Mo; Xu Hong; Feng Gao; Lin Du; Jun Wang; Gilbert S Omenn; Biaoyang Lin
Journal:  BMC Bioinformatics       Date:  2008-12-16       Impact factor: 3.169

6.  Identification of Circulating Biomarker Candidates for Hepatocellular Carcinoma (HCC): An Integrated Prioritization Approach.

Authors:  Faryal Mehwish Awan; Anam Naz; Ayesha Obaid; Amjad Ali; Jamil Ahmad; Sadia Anjum; Hussnain Ahmed Janjua
Journal:  PLoS One       Date:  2015-09-28       Impact factor: 3.240
  6 in total

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