Literature DB >> 25116740

Molecular modeling of potential anticancer agents from African medicinal plants.

Fidele Ntie-Kang1, Justina Ngozi Nwodo, Akachukwu Ibezim, Conrad Veranso Simoben, Berin Karaman, Valery Fuh Ngwa, Wolfgang Sippl, Michael Umale Adikwu, Luc Meva'a Mbaze.   

Abstract

Naturally occurring anticancer compounds represent about half of the chemotherapeutic drugs which have been put in the market against cancer until date. Computer-based or in silico virtual screening methods are often used in lead/hit discovery protocols. In this study, the "drug-likeness" of ~400 compounds from African medicinal plants that have shown in vitro and/or in vivo anticancer, cytotoxic, and antiproliferative activities has been explored. To verify potential binding to anticancer drug targets, the interactions between the compounds and 14 selected targets have been analyzed by in silico modeling. Docking and binding affinity calculations were carried out, in comparison with known anticancer agents comprising ~1,500 published naturally occurring plant-based compounds from around the world. The results reveal that African medicinal plants could represent a good starting point for the discovery of anticancer drugs. The small data set generated (named AfroCancer) has been made available for research groups working on virtual screening.

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Year:  2014        PMID: 25116740     DOI: 10.1021/ci5003697

Source DB:  PubMed          Journal:  J Chem Inf Model        ISSN: 1549-9596            Impact factor:   4.956


  13 in total

1.  Computational identification of bioactive compounds from Cydonia oblonga Mill. against hepatocellular carcinoma by targeting pTEN and HBx-interacting protein.

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Journal:  J Mol Model       Date:  2022-06-17       Impact factor: 1.810

2.  In silico approach: biological prediction of nordentatin derivatives as anticancer agent inhibitors in the cAMP pathway.

Authors:  Muhammad Ikhlas Abdjan; Nanik Siti Aminah; Imam Siswanto; Tin Myo Thant; Alfinda Novi Kristanti; Yoshiaki Takaya
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3.  TM-MC: a database of medicinal materials and chemical compounds in Northeast Asian traditional medicine.

Authors:  Sang-Kyun Kim; SeJin Nam; Hyunchul Jang; Anna Kim; Jeong-Ju Lee
Journal:  BMC Complement Altern Med       Date:  2015-07-09       Impact factor: 3.659

4.  Integrated Computational Approach for Virtual Hit Identification against Ebola Viral Proteins VP35 and VP40.

Authors:  Muhammad Usman Mirza; Nazia Ikram
Journal:  Int J Mol Sci       Date:  2016-10-26       Impact factor: 5.923

5.  Oxazin-5-Ones as a Novel Class of Penicillin Binding Protein Inhibitors: Design, Synthesis and Structure Activity Relationship.

Authors:  Efeturi Abraham Onoabedje; Akachukwu Ibezim; Sunday Nwankwor Okafor; Ufuoma Shalom Onoabedje; Uchechukwu Chris Okoro
Journal:  PLoS One       Date:  2016-10-17       Impact factor: 3.240

6.  Experimental and In-Silico Investigation of Anti-Microbial Activity of 1-Chloro-2-Isocyanatoethane Derivatives of Thiomorpholine, Piperazine and Morpholine.

Authors:  Charles O Nwuche; Oguejiofo T Ujam; Akachukwu Ibezim; Ifeoma B Ujam
Journal:  PLoS One       Date:  2017-01-20       Impact factor: 3.240

7.  Identification of Bichalcones as Sirtuin Inhibitors by Virtual Screening and In Vitro Testing.

Authors:  Berin Karaman; Zayan Alhalabi; Sören Swyter; Shetonde O Mihigo; Kerstin Andrae-Marobela; Manfred Jung; Wolfgang Sippl; Fidele Ntie-Kang
Journal:  Molecules       Date:  2018-02-14       Impact factor: 4.411

Review 8.  Review on natural products databases: where to find data in 2020.

Authors:  Maria Sorokina; Christoph Steinbeck
Journal:  J Cheminform       Date:  2020-04-03       Impact factor: 5.514

9.  Pharmacophore modeling and in silico toxicity assessment of potential anticancer agents from African medicinal plants.

Authors:  Fidele Ntie-Kang; Conrad Veranso Simoben; Berin Karaman; Valery Fuh Ngwa; Philip Neville Judson; Wolfgang Sippl; Luc Meva'a Mbaze
Journal:  Drug Des Devel Ther       Date:  2016-07-04       Impact factor: 4.162

10.  NP-Scout: Machine Learning Approach for the Quantification and Visualization of the Natural Product-Likeness of Small Molecules.

Authors:  Ya Chen; Conrad Stork; Steffen Hirte; Johannes Kirchmair
Journal:  Biomolecules       Date:  2019-01-24
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