Literature DB >> 25109856

Pairwise alignment of chromatograms using an extended Fisher-Rao metric.

W E Wallace1, A Srivastava2, K H Telu3, Y Simón-Manso4.   

Abstract

A conceptually new approach for aligning chromatograms is introduced and applied to examples of metabolite identification in human blood plasma by liquid chromatography-mass spectrometry (LC-MS). A square-root representation of the chromatogram's derivative coupled with an extended Fisher-Rao metric enables the computation of relative differences between chromatograms. Minimization of these differences using a common dynamic programming algorithm brings the chromatograms into alignment. Application to a complex sample, National Institute of Standards and Technology (NIST) Standard Reference Material 1950, Metabolites in Human Plasma, analyzed by two different LC-MS methods having significantly different ranges of elution time is described. Published by Elsevier B.V.

Entities:  

Keywords:  Alignment; Chromatography; Metabolomics; Registration; Retention time; Warping

Mesh:

Year:  2014        PMID: 25109856     DOI: 10.1016/j.aca.2014.07.004

Source DB:  PubMed          Journal:  Anal Chim Acta        ISSN: 0003-2670            Impact factor:   6.558


  1 in total

1.  Analysis of human plasma metabolites across different liquid chromatography/mass spectrometry platforms: Cross-platform transferable chemical signatures.

Authors:  Kelly H Telu; Xinjian Yan; William E Wallace; Stephen E Stein; Yamil Simón-Manso
Journal:  Rapid Commun Mass Spectrom       Date:  2016-03-15       Impact factor: 2.419

  1 in total

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