Literature DB >> 25106613

From normal to anomalous diffusion in comb-like structures in three dimensions.

Alexander M Berezhkovskii1, Leonardo Dagdug1, Sergey M Bezrukov1.   

Abstract

Diffusion in a comb-like structure, formed by a main cylindrical tube with identical periodic dead ends of cylindrical shape, occurs slower than that in the same system without dead ends. The reason is that the particle, entering a dead end, interrupts its propagation along the tube axis. The slowdown becomes stronger and stronger as the dead end length increases, since the particle spends more and more time in the dead ends. In the limiting case of infinitely long dead ends, diffusion becomes anomalous with the exponent equal to 1/2. We develop a formalism which allows us to study the mean square displacement of the particle along the tube axis in such systems. The formalism is applicable for an arbitrary dead end length, including the case of anomalous diffusion in a tube with infinitely long dead ends. In particular, we demonstrate how intermediate anomalous diffusion arises when the dead ends are long enough.

Mesh:

Year:  2014        PMID: 25106613      PMCID: PMC4137885          DOI: 10.1063/1.4891566

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  19 in total

1.  Surface relaxation and the long-time diffusion coefficient in porous media: Periodic geometries.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1994-01-01

2.  Maximum geometrical hindrance to diffusion in brain extracellular space surrounding uniformly spaced convex cells.

Authors:  L Tao; C Nicholson
Journal:  J Theor Biol       Date:  2004-07-07       Impact factor: 2.691

3.  Anomalous diffusion in Purkinje cell dendrites caused by spines.

Authors:  Fidel Santamaria; Stefan Wils; Erik De Schutter; George J Augustine
Journal:  Neuron       Date:  2006-11-22       Impact factor: 17.173

4.  Boundary homogenization for trapping by patchy surfaces.

Authors:  Alexander M Berezhkovskii; Yurii A Makhnovskii; Michael I Monine; Vladimir Yu Zitserman; Stanislav Y Shvartsman
Journal:  J Chem Phys       Date:  2004-12-08       Impact factor: 3.488

5.  Cell cavities increase tortuosity in brain extracellular space.

Authors:  A Tao; L Tao; C Nicholson
Journal:  J Theor Biol       Date:  2005-06-21       Impact factor: 2.691

6.  Homogenization of boundary conditions for surfaces with regular arrays of traps.

Authors:  Alexander M Berezhkovskii; Michael I Monine; Cyrill B Muratov; Stanislav Y Shvartsman
Journal:  J Chem Phys       Date:  2006-01-21       Impact factor: 3.488

7.  Transient diffusion in a tube with dead ends.

Authors:  Leonardo Dagdug; Alexander M Berezhkovskii; Yurii A Makhnovskii; Vladimir Yu Zitserman
Journal:  J Chem Phys       Date:  2007-12-14       Impact factor: 3.488

Review 8.  Wanted: a positive control for anomalous subdiffusion.

Authors:  Michael J Saxton
Journal:  Biophys J       Date:  2012-12-18       Impact factor: 4.033

9.  A model of effective diffusion and tortuosity in the extracellular space of the brain.

Authors:  Jan Hrabe; Sabina Hrabetová; Karel Segeth
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

Review 10.  Contribution of dead-space microdomains to tortuosity of brain extracellular space.

Authors:  Sabina Hrabetová; Charles Nicholson
Journal:  Neurochem Int       Date:  2004-09       Impact factor: 3.921

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  5 in total

1.  A new approach to the problem of bulk-mediated surface diffusion.

Authors:  Alexander M Berezhkovskii; Leonardo Dagdug; Sergey M Bezrukov
Journal:  J Chem Phys       Date:  2015-08-28       Impact factor: 3.488

2.  Biased diffusion in three-dimensional comb-like structures.

Authors:  Alexander M Berezhkovskii; Leonardo Dagdug; Sergey M Bezrukov
Journal:  J Chem Phys       Date:  2015-04-07       Impact factor: 3.488

3.  A Model for the Transient Subdiffusive Behavior of Particles in Mucus.

Authors:  Matthias Ernst; Thomas John; Marco Guenther; Christian Wagner; Ulrich F Schaefer; Claus-Michael Lehr
Journal:  Biophys J       Date:  2017-01-10       Impact factor: 4.033

4.  Bulk-mediated surface transport in the presence of bias.

Authors:  Alexander M Berezhkovskii; Leonardo Dagdug; Sergey M Bezrukov
Journal:  J Chem Phys       Date:  2017-07-07       Impact factor: 3.488

5.  Trapping in and Escape from Branched Structures of Neuronal Dendrites.

Authors:  Robin Jose; Ludger Santen; M Reza Shaebani
Journal:  Biophys J       Date:  2018-10-04       Impact factor: 4.033

  5 in total

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