Literature DB >> 25854222

Biased diffusion in three-dimensional comb-like structures.

Alexander M Berezhkovskii1, Leonardo Dagdug1, Sergey M Bezrukov1.   

Abstract

In this paper, we study biased diffusion of point Brownian particles in a three-dimensional comb-like structure formed by a main cylindrical tube with identical periodic cylindrical dead ends. It is assumed that the dead ends are thin cylinders whose radius is much smaller than both the radius of the main tube and the distance between neighboring dead ends. It is also assumed that in the main tube, the particle, in addition to its regular diffusion, moves with a uniform constant drift velocity. For such a system, we develop a formalism that allows us to derive analytical expressions for the Laplace transforms of the first two moments of the particle displacement along the main tube axis. Inverting these Laplace transforms numerically, one can find the time dependences of the two moments for arbitrary values of both the drift velocity and the dead-end length, including the limiting case of infinitely long dead ends, where the unbiased diffusion becomes anomalous at sufficiently long times. The expressions for the Laplace transforms are used to find the effective drift velocity and diffusivity of the particle as functions of its drift velocity in the main tube and the tube geometric parameters. As might be expected from common-sense arguments, the effective drift velocity monotonically decreases from the initial drift velocity to zero as the dead-end length increases from zero to infinity. The effective diffusivity is a more complex, non-monotonic function of the dead-end length. As this length increases from zero to infinity, the effective diffusivity first decreases, reaches a minimum, and then increases approaching a plateau value which is proportional to the square of the particle drift velocity in the main tube.

Mesh:

Year:  2015        PMID: 25854222      PMCID: PMC4385101          DOI: 10.1063/1.4916310

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  32 in total

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3.  Cell cavities increase tortuosity in brain extracellular space.

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4.  Homogenization of boundary conditions for surfaces with regular arrays of traps.

Authors:  Alexander M Berezhkovskii; Michael I Monine; Cyrill B Muratov; Stanislav Y Shvartsman
Journal:  J Chem Phys       Date:  2006-01-21       Impact factor: 3.488

5.  Transient diffusion in a tube with dead ends.

Authors:  Leonardo Dagdug; Alexander M Berezhkovskii; Yurii A Makhnovskii; Vladimir Yu Zitserman
Journal:  J Chem Phys       Date:  2007-12-14       Impact factor: 3.488

Review 6.  Diffusion in confined geometries.

Authors:  P Sekhar Burada; Peter Hänggi; Fabio Marchesoni; Gerhard Schmid; Peter Talkner
Journal:  Chemphyschem       Date:  2009-01-12       Impact factor: 3.102

7.  Anomalous diffusion on a random comblike structure.

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Journal:  Phys Rev A Gen Phys       Date:  1987-08-01

8.  Analytic method for calculating properties of random walks on networks.

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Journal:  Phys Rev A Gen Phys       Date:  1986-04

9.  Anomalous diffusion imposed by dendritic spines (Commentary on Santamaria et al.).

Authors:  Chris I De Zeeuw; Tycho M Hoogland
Journal:  Eur J Neurosci       Date:  2011-08       Impact factor: 3.386

Review 10.  Contribution of dead-space microdomains to tortuosity of brain extracellular space.

Authors:  Sabina Hrabetová; Charles Nicholson
Journal:  Neurochem Int       Date:  2004-09       Impact factor: 3.921

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  3 in total

1.  A new approach to the problem of bulk-mediated surface diffusion.

Authors:  Alexander M Berezhkovskii; Leonardo Dagdug; Sergey M Bezrukov
Journal:  J Chem Phys       Date:  2015-08-28       Impact factor: 3.488

2.  A Model for the Transient Subdiffusive Behavior of Particles in Mucus.

Authors:  Matthias Ernst; Thomas John; Marco Guenther; Christian Wagner; Ulrich F Schaefer; Claus-Michael Lehr
Journal:  Biophys J       Date:  2017-01-10       Impact factor: 4.033

3.  Bulk-mediated surface transport in the presence of bias.

Authors:  Alexander M Berezhkovskii; Leonardo Dagdug; Sergey M Bezrukov
Journal:  J Chem Phys       Date:  2017-07-07       Impact factor: 3.488

  3 in total

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