Literature DB >> 25102091

Novel tetra-peptide insertion in Gag-p6 ALIX-binding motif in HIV-1 subtype C associated with protease inhibitor failure in Indian patients.

Ujjwal Neogi1, Shwetha D Rao, Irene Bontell, Jens Verheyen, Vasudev R Rao, Sagar C Gore, Neelesh Soni, Anita Shet, Eugen Schülter, Maria L Ekstrand, Amogne Wondwossen, Rolf Kaiser, Mallur S Madhusudhan, Vinayaka R Prasad, Anders Sonnerborg.   

Abstract

A novel tetra-peptide insertion was identified in Gag-p6 ALIX-binding region, which appeared in protease inhibitor failure Indian HIV-1C sequences (odds ratio=17.1, P < 0.001) but was naturally present in half of untreated Ethiopian HIV-1C sequences. The insertion is predicted to restore ALIX-mediated virus release pathway, which is lacking in HIV-1C. The clinical importance of the insertion needs to be evaluated in HIV-1C dominating regions wherein the use of protease inhibitor drugs are being scaled up.

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Year:  2014        PMID: 25102091      PMCID: PMC4198440          DOI: 10.1097/QAD.0000000000000419

Source DB:  PubMed          Journal:  AIDS        ISSN: 0269-9370            Impact factor:   4.177


  28 in total

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  11 in total

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Review 2.  Highly resistant HIV-1 proteases and strategies for their inhibition.

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3.  HIV-1 Subtype C with PYxE Insertion Has Enhanced Binding of Gag-p6 to Host Cell Protein ALIX and Increased Replication Fitness.

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5.  HIV-1 Gag-Pol Sequences from Ugandan Early Infections Reveal Sequence Variants Associated with Elevated Replication Capacity.

Authors:  Anne Kapaata; Sheila N Balinda; Rui Xu; Maria G Salazar; Kimberly Herard; Kelsie Brooks; Kato Laban; Jonathan Hare; Dario Dilernia; Anatoli Kamali; Eugene Ruzagira; Freddie Mukasa; Jill Gilmour; Jesus F Salazar-Gonzalez; Ling Yue; Matthew Cotten; Eric Hunter; Pontiano Kaleebu
Journal:  Viruses       Date:  2021-01-23       Impact factor: 5.048

6.  Subtype-independent near full-length HIV-1 genome sequencing and assembly to be used in large molecular epidemiological studies and clinical management.

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8.  Prediction of coreceptor usage by five bioinformatics tools in a large Ethiopian HIV-1 subtype C cohort.

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10.  PYRE insertion within HIV-1 subtype C p6-Gag functions as an ALIX-dependent late domain.

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