Literature DB >> 25101744

High-resolution metagenomics.

Eran Mick1, Rotem Sorek2.   

Abstract

Mesh:

Year:  2014        PMID: 25101744     DOI: 10.1038/nbt.2962

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


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  12 in total

1.  Untangling genomes from metagenomes: revealing an uncultured class of marine Euryarchaeota.

Authors:  Vaughn Iverson; Robert M Morris; Christian D Frazar; Chris T Berthiaume; Rhonda L Morales; E Virginia Armbrust
Journal:  Science       Date:  2012-02-03       Impact factor: 47.728

2.  Diversity of the human intestinal microbial flora.

Authors:  Paul B Eckburg; Elisabeth M Bik; Charles N Bernstein; Elizabeth Purdom; Les Dethlefsen; Michael Sargent; Steven R Gill; Karen E Nelson; David A Relman
Journal:  Science       Date:  2005-04-14       Impact factor: 47.728

Review 3.  Horizontal gene transfer, genome innovation and evolution.

Authors:  J Peter Gogarten; Jeffrey P Townsend
Journal:  Nat Rev Microbiol       Date:  2005-09       Impact factor: 60.633

4.  Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla.

Authors:  Kelly C Wrighton; Brian C Thomas; Itai Sharon; Christopher S Miller; Cindy J Castelle; Nathan C VerBerkmoes; Michael J Wilkins; Robert L Hettich; Mary S Lipton; Kenneth H Williams; Philip E Long; Jillian F Banfield
Journal:  Science       Date:  2012-09-28       Impact factor: 47.728

5.  Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus.

Authors:  Nadav Kashtan; Sara E Roggensack; Sébastien Rodrigue; Jessie W Thompson; Steven J Biller; Allison Coe; Huiming Ding; Pekka Marttinen; Rex R Malmstrom; Roman Stocker; Michael J Follows; Ramunas Stepanauskas; Sallie W Chisholm
Journal:  Science       Date:  2014-04-25       Impact factor: 47.728

Review 6.  Ordering microbial diversity into ecologically and genetically cohesive units.

Authors:  B Jesse Shapiro; Martin F Polz
Journal:  Trends Microbiol       Date:  2014-03-13       Impact factor: 17.079

7.  Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes.

Authors:  H Bjørn Nielsen; Mathieu Almeida; Agnieszka Sierakowska Juncker; Simon Rasmussen; Junhua Li; Shinichi Sunagawa; Damian R Plichta; Laurent Gautier; Anders G Pedersen; Emmanuelle Le Chatelier; Eric Pelletier; Ida Bonde; Trine Nielsen; Chaysavanh Manichanh; Manimozhiyan Arumugam; Jean-Michel Batto; Marcelo B Quintanilha Dos Santos; Nikolaj Blom; Natalia Borruel; Kristoffer S Burgdorf; Fouad Boumezbeur; Francesc Casellas; Joël Doré; Piotr Dworzynski; Francisco Guarner; Torben Hansen; Falk Hildebrand; Rolf S Kaas; Sean Kennedy; Karsten Kristiansen; Jens Roat Kultima; Pierre Léonard; Florence Levenez; Ole Lund; Bouziane Moumen; Denis Le Paslier; Nicolas Pons; Oluf Pedersen; Edi Prifti; Junjie Qin; Jeroen Raes; Søren Sørensen; Julien Tap; Sebastian Tims; David W Ussery; Takuji Yamada; Pierre Renault; Thomas Sicheritz-Ponten; Peer Bork; Jun Wang; Søren Brunak; S Dusko Ehrlich
Journal:  Nat Biotechnol       Date:  2014-07-06       Impact factor: 54.908

Review 8.  Comparison of 61 sequenced Escherichia coli genomes.

Authors:  Oksana Lukjancenko; Trudy M Wassenaar; David W Ussery
Journal:  Microb Ecol       Date:  2010-07-11       Impact factor: 4.552

9.  Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes.

Authors:  Mads Albertsen; Philip Hugenholtz; Adam Skarshewski; Kåre L Nielsen; Gene W Tyson; Per H Nielsen
Journal:  Nat Biotechnol       Date:  2013-05-26       Impact factor: 54.908

10.  The NIH Human Microbiome Project.

Authors:  Jane Peterson; Susan Garges; Maria Giovanni; Pamela McInnes; Lu Wang; Jeffery A Schloss; Vivien Bonazzi; Jean E McEwen; Kris A Wetterstrand; Carolyn Deal; Carl C Baker; Valentina Di Francesco; T Kevin Howcroft; Robert W Karp; R Dwayne Lunsford; Christopher R Wellington; Tsegahiwot Belachew; Michael Wright; Christina Giblin; Hagit David; Melody Mills; Rachelle Salomon; Christopher Mullins; Beena Akolkar; Lisa Begg; Cindy Davis; Lindsey Grandison; Michael Humble; Jag Khalsa; A Roger Little; Hannah Peavy; Carol Pontzer; Matthew Portnoy; Michael H Sayre; Pamela Starke-Reed; Samir Zakhari; Jennifer Read; Bracie Watson; Mark Guyer
Journal:  Genome Res       Date:  2009-10-09       Impact factor: 9.043

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  4 in total

1.  Metagenomic analysis reveals potential interactions in an artificial coculture.

Authors:  Minglei Ren; Guiying Zhang; Zi Ye; Zhixian Qiao; Meili Xie; Yan Lin; Tao Li; Jindong Zhao
Journal:  AMB Express       Date:  2017-11-02       Impact factor: 3.298

Review 2.  Interpreting Microbial Biosynthesis in the Genomic Age: Biological and Practical Considerations.

Authors:  Ian J Miller; Marc G Chevrette; Jason C Kwan
Journal:  Mar Drugs       Date:  2017-06-06       Impact factor: 5.118

3.  A novel thermostable and halophilic thioredoxin reductase from the Red Sea Atlantis II hot brine pool.

Authors:  Elham A Badiea; Ahmed A Sayed; Mohamad Maged; Walid M Fouad; Mahmoud M Said; Amr Y Esmat
Journal:  PLoS One       Date:  2019-05-31       Impact factor: 3.240

4.  Single sample resolution of rare microbial dark matter in a marine invertebrate metagenome.

Authors:  Ian J Miller; Theodore R Weyna; Stephen S Fong; Grace E Lim-Fong; Jason C Kwan
Journal:  Sci Rep       Date:  2016-09-29       Impact factor: 4.379

  4 in total

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