Literature DB >> 25100654

Deadenylase depletion protects inherited mRNAs in primordial germ cells.

S Zachary Swartz1, Adrian M Reich1, Nathalie Oulhen1, Tal Raz2, Patrice M Milos2, Joseph P Campanale3, Amro Hamdoun3, Gary M Wessel4.   

Abstract

A crucial event in animal development is the specification of primordial germ cells (PGCs), which become the stem cells that create sperm and eggs. How PGCs are created provides a valuable paradigm for understanding stem cells in general. We find that the PGCs of the sea urchin Strongylocentrotus purpuratus exhibit broad transcriptional repression, yet enrichment for a set of inherited mRNAs. Enrichment of several germline determinants in the PGCs requires the RNA-binding protein Nanos to target the transcript that encodes CNOT6, a deadenylase, for degradation in the PGCs, thereby creating a stable environment for RNA. Misexpression of CNOT6 in the PGCs results in their failure to retain Seawi transcripts and Vasa protein. Conversely, broad knockdown of CNOT6 expands the domain of Seawi RNA as well as exogenous reporters. Thus, Nanos-dependent spatially restricted CNOT6 differential expression is used to selectively localize germline RNAs to the PGCs. Our findings support a 'time capsule' model of germline determination, whereby the PGCs are insulated from differentiation by retaining the molecular characteristics of the totipotent egg and early embryo.
© 2014. Published by The Company of Biologists Ltd.

Entities:  

Keywords:  CCR4; CNOT6; Germ line; Nanos; PGC; Pumilio; Sea urchin; Transcriptomics

Mesh:

Substances:

Year:  2014        PMID: 25100654      PMCID: PMC4197533          DOI: 10.1242/dev.110395

Source DB:  PubMed          Journal:  Development        ISSN: 0950-1991            Impact factor:   6.868


  46 in total

1.  Germ line determinants are not localized early in sea urchin development, but do accumulate in the small micromere lineage.

Authors:  Celina E Juliano; Ekaterina Voronina; Christie Stack; Maryanna Aldrich; Andrew R Cameron; Gary M Wessel
Journal:  Dev Biol       Date:  2006-08-04       Impact factor: 3.582

2.  A database of mRNA expression patterns for the sea urchin embryo.

Authors:  Zheng Wei; Robert C Angerer; Lynne M Angerer
Journal:  Dev Biol       Date:  2006-08-22       Impact factor: 3.582

3.  Differential regulation of germline mRNAs in soma and germ cells by zebrafish miR-430.

Authors:  Yuichiro Mishima; Antonio J Giraldez; Yasuaki Takeda; Toshinobu Fujiwara; Hiroshi Sakamoto; Alexander F Schier; Kunio Inoue
Journal:  Curr Biol       Date:  2006-11-07       Impact factor: 10.834

Review 4.  Less is more: specification of the germline by transcriptional repression.

Authors:  Akira Nakamura; Geraldine Seydoux
Journal:  Development       Date:  2008-12       Impact factor: 6.868

5.  Temporal reciprocity of miRNAs and their targets during the maternal-to-zygotic transition in Drosophila.

Authors:  Natascha Bushati; Alexander Stark; Julius Brennecke; Stephen M Cohen
Journal:  Curr Biol       Date:  2008-04-08       Impact factor: 10.834

Review 6.  The molecular machinery of germ line specification.

Authors:  Ben Ewen-Campen; Evelyn E Schwager; Cassandra G M Extavour
Journal:  Mol Reprod Dev       Date:  2010-01       Impact factor: 2.609

7.  Smaug recruits the CCR4/POP2/NOT deadenylase complex to trigger maternal transcript localization in the early Drosophila embryo.

Authors:  Jennifer L Semotok; Ramona L Cooperstock; Benjamin D Pinder; Heli K Vari; Howard D Lipshitz; Craig A Smibert
Journal:  Curr Biol       Date:  2005-02-22       Impact factor: 10.834

8.  Nanos functions to maintain the fate of the small micromere lineage in the sea urchin embryo.

Authors:  Celina E Juliano; Mamiko Yajima; Gary M Wessel
Journal:  Dev Biol       Date:  2009-10-28       Impact factor: 3.582

9.  The fate of the small micromeres in sea urchin development.

Authors:  J R Pehrson; L H Cohen
Journal:  Dev Biol       Date:  1986-02       Impact factor: 3.582

10.  Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels.

Authors:  Marcel H Schulz; Daniel R Zerbino; Martin Vingron; Ewan Birney
Journal:  Bioinformatics       Date:  2012-02-24       Impact factor: 6.937

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  18 in total

Review 1.  Germ Line Versus Soma in the Transition from Egg to Embryo.

Authors:  S Zachary Swartz; Gary M Wessel
Journal:  Curr Top Dev Biol       Date:  2015-08-19       Impact factor: 4.897

2.  Report from the 2016 University of California, San Francisco, Center for Reproductive Sciences retreat.

Authors:  Paolo F Rinaudo; Marco Conti
Journal:  Mol Reprod Dev       Date:  2017-08-07       Impact factor: 2.609

Review 3.  Methods to label, isolate, and image sea urchin small micromeres, the primordial germ cells (PGCs).

Authors:  Joseph P Campanale; Amro Hamdoun; Gary M Wessel; Yi-Hsien Su; Nathalie Oulhen
Journal:  Methods Cell Biol       Date:  2019-01-08       Impact factor: 1.441

4.  Transient translational quiescence in primordial germ cells.

Authors:  Nathalie Oulhen; S Zachary Swartz; Jessica Laird; Alexandra Mascaro; Gary M Wessel
Journal:  Development       Date:  2017-02-24       Impact factor: 6.868

Review 5.  Genome-wide analysis of chromatin accessibility using ATAC-seq.

Authors:  Tanvi Shashikant; Charles A Ettensohn
Journal:  Methods Cell Biol       Date:  2018-12-21       Impact factor: 1.441

Review 6.  From genome to anatomy: The architecture and evolution of the skeletogenic gene regulatory network of sea urchins and other echinoderms.

Authors:  Tanvi Shashikant; Jian Ming Khor; Charles A Ettensohn
Journal:  Genesis       Date:  2018-10       Impact factor: 2.487

7.  A single cell RNA sequencing resource for early sea urchin development.

Authors:  Stephany Foster; Nathalie Oulhen; Gary Wessel
Journal:  Development       Date:  2020-09-11       Impact factor: 6.868

8.  Nodal induces sequential restriction of germ cell factors during primordial germ cell specification.

Authors:  Tara M Fresques; Gary M Wessel
Journal:  Development       Date:  2018-01-22       Impact factor: 6.868

Review 9.  Specifying and protecting germ cell fate.

Authors:  Susan Strome; Dustin Updike
Journal:  Nat Rev Mol Cell Biol       Date:  2015-07       Impact factor: 94.444

10.  Distinct transcriptional regulation of Nanos2 in the germ line and soma by the Wnt and delta/notch pathways.

Authors:  Nathalie Oulhen; S Zachary Swartz; Lingyu Wang; Athula Wikramanayake; Gary M Wessel
Journal:  Dev Biol       Date:  2019-05-07       Impact factor: 3.582

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