Literature DB >> 25096813

External electric field effects on the mechanical properties of the αβ-tubulin dimer of microtubules: a molecular dynamics study.

H R Saeidi1, A Lohrasebi, K Mahnam.   

Abstract

The mechanical properties of the αβ-tubulin dimer of microtubules was modeled by using the molecular dynamics (MD) simulation method. The effect on the mechanical properties of the dimer of the existence and nonexistence of an applied electric field, either constant or periodic, was studied. Since there are charged or polar groups in the dimer structure, the electric field can interact with the dimer. The elastic constant and Young's modulus of the dimer were decreased when the dimer was exposed to a constant electric field of 0.03 V/nm. Furthermore, applying an oscillating electric field in the 1 GHz range to the dimer increased the elastic constant and Young's modulus of the dimer. These parameters were related to dimer rigidity and, consequently, in this frequency range, the application of electric fields may affect the function of microtubules.

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Year:  2014        PMID: 25096813     DOI: 10.1007/s00894-014-2395-1

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  16 in total

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Authors:  O Wagner; J Zinke; P Dancker; W Grill; J Bereiter-Hahn
Journal:  Biophys J       Date:  1999-05       Impact factor: 4.033

2.  Mechanical properties of a complete microtubule revealed through molecular dynamics simulation.

Authors:  David B Wells; Aleksei Aksimentiev
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

3.  Dynamics of K+ ion conduction through Kv1.2.

Authors:  Fatemeh Khalili-Araghi; Emad Tajkhorshid; Klaus Schulten
Journal:  Biophys J       Date:  2006-07-14       Impact factor: 4.033

4.  High-resolution model of the microtubule.

Authors:  E Nogales; M Whittaker; R A Milligan; K H Downing
Journal:  Cell       Date:  1999-01-08       Impact factor: 41.582

5.  Modelling the influence of thermal effects induced by radio frequency electric field on the dynamics of the ATPase nano-biomolecular motors.

Authors:  A Lohrasebi; S Mohamadi; S Fadaie; H Rafii-Tabar
Journal:  Phys Med       Date:  2011-08-05       Impact factor: 2.685

6.  Structure of the alpha beta tubulin dimer by electron crystallography.

Authors:  E Nogales; S G Wolf; K H Downing
Journal:  Nature       Date:  1998-01-08       Impact factor: 49.962

7.  Comparative studies of microtubule mechanics with two competing models suggest functional roles of alternative tubulin lateral interactions.

Authors:  Zhanghan Wu; Eva Nogales; Jianhua Xing
Journal:  Biophys J       Date:  2012-06-19       Impact factor: 4.033

8.  Molecular dynamics simulations of the rotary motor F(0) under external electric fields across the membrane.

Authors:  Yang-Shan Lin; Jung-Hsin Lin; Chien-Cheng Chang
Journal:  Biophys J       Date:  2010-03-17       Impact factor: 4.033

9.  Flexural rigidity of microtubules measured with the use of optical tweezers.

Authors:  H Felgner; R Frank; M Schliwa
Journal:  J Cell Sci       Date:  1996-02       Impact factor: 5.285

10.  Soybean hydrophobic protein response to external electric field: a molecular modeling approach.

Authors:  Ashutosh Singh; Valérie Orsat; Vijaya Raghavan
Journal:  Biomolecules       Date:  2013-02-11
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  4 in total

1.  Influence of GHz electric fields on the mechanical properties of a microtubule.

Authors:  S S Setayandeh; A Lohrasebi
Journal:  J Mol Model       Date:  2015-03-13       Impact factor: 1.810

2.  Tubulin's response to external electric fields by molecular dynamics simulations.

Authors:  Joshua J Timmons; Jordane Preto; Jack A Tuszynski; Eric T Wong
Journal:  PLoS One       Date:  2018-09-19       Impact factor: 3.240

3.  Tubulin response to intense nanosecond-scale electric field in molecular dynamics simulation.

Authors:  Paolo Marracino; Daniel Havelka; Jiří Průša; Micaela Liberti; Jack Tuszynski; Ahmed T Ayoub; Francesca Apollonio; Michal Cifra
Journal:  Sci Rep       Date:  2019-07-19       Impact factor: 4.379

4.  Electro-opening of a microtubule lattice in silico.

Authors:  Jiří Průša; Ahmed Taha Ayoub; Djamel Eddine Chafai; Daniel Havelka; Michal Cifra
Journal:  Comput Struct Biotechnol J       Date:  2021-03-04       Impact factor: 7.271

  4 in total

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