Literature DB >> 25089975

Motion artifact and background noise suppression on optical microangiography frames using a naïve Bayes mask.

Roberto Reif, Utku Baran, Ruikang K Wang.   

Abstract

Optical coherence tomography (OCT) is a technique that allows for the three-dimensional (3D) imaging of small volumes of tissue (a few millimeters) with high resolution (∼10  μm). Optical microangiography (OMAG) is a method of processing OCT data, which allows for the extraction of the tissue vasculature with capillary resolution from the OCT images. Cross-sectional B-frame OMAG images present the location of the patent blood vessels; however, the signal-to-noise-ratio of these images can be affected by several factors such as the quality of the OCT system and the tissue motion artifact. This background noise can appear in the en face projection view image. In this work we propose to develop a binary mask that can be applied on the cross-sectional B-frame OMAG images, which will reduce the background noise while leaving the signal from the blood vessels intact. The mask is created by using a naïve Bayes (NB) classification algorithm trained with a gold standard image which is manually segmented by an expert. The masked OMAG images present better contrast for binarizing the image and quantifying the result without the influence of noise. The results are compared with a previously developed frequency rejection filter (FRF) method which is applied on the en face projection view image. It is demonstrated that both the NB and FRF methods provide similar vessel length fractions. The advantage of the NB method is that the results are applicable in 3D and that its use is not limited to periodic motion artifacts.

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Year:  2014        PMID: 25089975      PMCID: PMC4303031          DOI: 10.1364/AO.53.004164

Source DB:  PubMed          Journal:  Appl Opt        ISSN: 1559-128X            Impact factor:   1.980


  22 in total

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4.  Three dimensional optical angiography.

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Journal:  Opt Express       Date:  2007-04-02       Impact factor: 3.894

5.  Optical coherence tomography.

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Journal:  Science       Date:  1991-11-22       Impact factor: 47.728

6.  Label-free imaging of blood vessel morphology with capillary resolution using optical microangiography.

Authors:  Roberto Reif; Ruikang K Wang
Journal:  Quant Imaging Med Surg       Date:  2012-09

7.  Uniform enhancement of optical micro-angiography images using Rayleigh contrast-limited adaptive histogram equalization.

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8.  Depth-resolved imaging of capillary networks in retina and choroid using ultrahigh sensitive optical microangiography.

Authors:  Ruikang K Wang; Lin An; Peter Francis; David J Wilson
Journal:  Opt Lett       Date:  2010-05-01       Impact factor: 3.776

9.  Ultrahigh sensitive optical microangiography for in vivo imaging of microcirculations within human skin tissue beds.

Authors:  Lin An; Jia Qin; Ruikang K Wang
Journal:  Opt Express       Date:  2010-04-12       Impact factor: 3.894

10.  Automated segmentation of retinal blood vessels in spectral domain optical coherence tomography scans.

Authors:  Matthäus Pilch; Yaroslava Wenner; Elisabeth Strohmayr; Markus Preising; Christoph Friedburg; Erdmuthe Meyer Zu Bexten; Birgit Lorenz; Knut Stieger
Journal:  Biomed Opt Express       Date:  2012-06-04       Impact factor: 3.732

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  5 in total

1.  Vasodynamics of pial and penetrating arterioles in relation to arteriolo-arteriolar anastomosis after focal stroke.

Authors:  Utku Baran; Yuandong Li; Ruikang K Wang
Journal:  Neurophotonics       Date:  2015-06-12       Impact factor: 3.593

2.  Automated segmentation and enhancement of optical coherence tomography-acquired images of rodent brain.

Authors:  Utku Baran; Wenbin Zhu; Woo June Choi; Michael Omori; Wenri Zhang; Nabil J Alkayed; Ruikang K Wang
Journal:  J Neurosci Methods       Date:  2016-06-17       Impact factor: 2.390

3.  High resolution imaging of acne lesion development and scarring in human facial skin using OCT-based microangiography.

Authors:  Utku Baran; Yuandong Li; Woo June Choi; Goknur Kalkan; Ruikang K Wang
Journal:  Lasers Surg Med       Date:  2015-03-05       Impact factor: 4.025

4.  Quantifying the vascular response to ischemia with speckle variance optical coherence tomography.

Authors:  Kristin M Poole; Devin R McCormack; Chetan A Patil; Craig L Duvall; Melissa C Skala
Journal:  Biomed Opt Express       Date:  2014-11-03       Impact factor: 3.732

5.  In vivo tissue injury mapping using optical coherence tomography based methods.

Authors:  Utku Baran; Yuandong Li; Ruikang K Wang
Journal:  Appl Opt       Date:  2015-07-20       Impact factor: 1.980

  5 in total

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