Literature DB >> 25086668

The changing face of the molecular evolutionary clock.

Simon Y W Ho1.   

Abstract

The molecular clock has played an important role in biological research, both as a description of the evolutionary process and as a tool for inferring evolutionary timescales. Genomic data have provided valuable insights into the molecular clock, allowing the patterns and causes of evolutionary rate variation to be characterized in increasing detail. I explain how genome sequences offer exciting opportunities for estimating the timescale of the Tree of Life. I describe the different approaches that have been used to deal with the computational and statistical challenges encountered in molecular clock analyses of genomic data. Finally, I offer a perspective on the future of molecular clocks, highlighting some of the key limitations and the most promising research directions.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Keywords:  genomic data; molecular clock; pacemaker models; phylogenetic analysis; rate heterogeneity

Mesh:

Year:  2014        PMID: 25086668     DOI: 10.1016/j.tree.2014.07.004

Source DB:  PubMed          Journal:  Trends Ecol Evol        ISSN: 0169-5347            Impact factor:   17.712


  31 in total

1.  Advances in Time Estimation Methods for Molecular Data.

Authors:  Sudhir Kumar; S Blair Hedges
Journal:  Mol Biol Evol       Date:  2016-02-16       Impact factor: 16.240

2.  A Simulation-Based Evaluation of Tip-Dating Under the Fossilized Birth-Death Process.

Authors:  Arong Luo; David A Duchêne; Chi Zhang; Chao-Dong Zhu; Simon Y W Ho
Journal:  Syst Biol       Date:  2020-03-01       Impact factor: 15.683

3.  Back to Gondwanaland: can ancient vicariance explain (some) Indian Ocean disjunct plant distributions?

Authors:  Michael D Pirie; Glenn Litsios; Dirk U Bellstedt; Nicolas Salamin; Jonathan Kissling
Journal:  Biol Lett       Date:  2015-06       Impact factor: 3.703

4.  The Implications of Lineage-Specific Rates for Divergence Time Estimation.

Authors:  Tom Carruthers; Michael J Sanderson; Robert W Scotland
Journal:  Syst Biol       Date:  2020-07-01       Impact factor: 15.683

5.  Genetic Stability and Evolution of the sigB Allele, Used for Listeria Sensu Stricto Subtyping and Phylogenetic Inference.

Authors:  Jingqiu Liao; Martin Wiedmann; Jasna Kovac
Journal:  Appl Environ Microbiol       Date:  2017-05-31       Impact factor: 4.792

6.  Early evolution of the angiosperm clade Asteraceae in the Cretaceous of Antarctica.

Authors:  Viviana D Barreda; Luis Palazzesi; Maria C Tellería; Eduardo B Olivero; J Ian Raine; Félix Forest
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-10       Impact factor: 11.205

Review 7.  Bayesian molecular clock dating of species divergences in the genomics era.

Authors:  Mario dos Reis; Philip C J Donoghue; Ziheng Yang
Journal:  Nat Rev Genet       Date:  2015-12-21       Impact factor: 53.242

Review 8.  Measurably evolving pathogens in the genomic era.

Authors:  Roman Biek; Oliver G Pybus; James O Lloyd-Smith; Xavier Didelot
Journal:  Trends Ecol Evol       Date:  2015-04-14       Impact factor: 17.712

Review 9.  Within-host evolution of bacterial pathogens.

Authors:  Xavier Didelot; A Sarah Walker; Tim E Peto; Derrick W Crook; Daniel J Wilson
Journal:  Nat Rev Microbiol       Date:  2016-01-19       Impact factor: 60.633

10.  Using Phylogenomic Data to Explore the Effects of Relaxed Clocks and Calibration Strategies on Divergence Time Estimation: Primates as a Test Case.

Authors:  Mario Dos Reis; Gregg F Gunnell; Jose Barba-Montoya; Alex Wilkins; Ziheng Yang; Anne D Yoder
Journal:  Syst Biol       Date:  2018-07-01       Impact factor: 9.160

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