| Literature DB >> 25083412 |
C Alisha Quandt1, Ryan M Kepler2, Walter Gams3, João P M Araújo4, Sayaka Ban5, Harry C Evans6, David Hughes7, Richard Humber8, Nigel Hywel-Jones9, Zengzhi Li10, J Jennifer Luangsa-Ard11, Stephen A Rehner2, Tatiana Sanjuan12, Hiroki Sato13, Bhushan Shrestha14, Gi-Ho Sung15, Yi-Jian Yao16, Rasoul Zare17, Joseph W Spatafora1.
Abstract
Ophiocordycipitaceae is a diverse family comprising ecologically, economically, medicinally, and culturally important fungi. The family was recognized due to the polyphyly of the genus Cordyceps and the broad diversity of the mostly arthropod-pathogenic lineages of Hypocreales. The other two cordyceps-like families, Cordycipitaceae and Clavicipitaceae, will be revised taxonomically elsewhere. Historically, many species were placed in Cordyceps, but other genera have been described in this family as well, including several based on anamorphic features. Currently there are 24 generic names in use across both asexual and sexual life stages for species of Ophiocordycipitaceae. To reflect changes in Art. 59 in the International Code of Nomenclature for algae, fungi, and plants (ICN), we propose to protect and to suppress names within Ophiocordycipitaceae, and to present taxonomic revisions in the genus Tolypocladium, based on rigorous and extensively sampled molecular phylogenetic analyses. When approaching this task, we considered the principles of priority, monophyly, minimizing taxonomic revisions, and the practical utility of these fungi within the wider biological research community.Entities:
Keywords: Article 59; Ophiocordycipitaceae; Tolypocladium; arthropod-pathogens; new combinations; nomenclature
Year: 2014 PMID: 25083412 PMCID: PMC4107890 DOI: 10.5598/imafungus.2014.05.01.12
Source DB: PubMed Journal: IMA Fungus ISSN: 2210-6340 Impact factor: 3.515
Specimen information and GenBank accession numbers for sequences used in this study.
| MRL GB5502 | AF245297 | |||||
| MRL MF6799 | AF373284 | |||||
| MRL GB6597 | AF389190 | |||||
| MRL MF5368LR | AF373282 | |||||
| CEM 1185 | KJ878907 | KJ878872 | KJ878955 | |||
| TNM F13893 | KJ878908 | KJ878956 | KJ878988 | KJ878943 | ||
| OSC 76404 | AF339572 | AF339522 | AY489616 | AY489650 | DQ522426 | |
| OSC 128579 | EF469123 | EF469076 | EF469060 | EF469089 | EF469107 | |
| BCC 18108 | KF049608 | KF049626 | KF049681 | KF049644 | ||
| NBRC 100745 | KF049606 | KF049624 | KF049679 | KF049642 | KF049667 | |
| NBRC 100746 | KF049607 | KF049625 | KF049680 | KF049643 | KF049668 | |
| EFCC 12075 | KJ878909 | KJ878873 | KJ878957 | KJ878989 | ||
| CBS 596.92 | AF106012 | |||||
| OSC 71233 | AY489689 | AY489721 | AY489615 | AY489649 | DQ522421 | |
| OSC 110990 | DQ522545 | DQ518759 | DQ522328 | DQ522373 | DQ522425 | |
| OSC 110991 | DQ522547 | DQ518761 | DQ522330 | DQ522375 | DQ522428 | |
| OSC 110992 | EF468816 | EF468864 | EF468919 | |||
| CBS 100239 | KJ878910 | KJ878874 | KJ878958 | KJ878990 | KJ878944 | |
| OSC 106405 | AY489691 | AY489723 | AY489618 | AY489652 | DQ522429 | |
| OSC 71235 | EF469124 | EF469077 | EF469061 | EF469090 | EF469108 | |
| CBS 250.82 | AF339588 | AF339539 | DQ522342 | DQ522388 | DQ522442 | |
| CBS 567.95 | AF339594 | AF339545 | DQ522343 | DQ522389 | DQ522443 | |
| CBS 335.8 | AF339589 | AF339540 | EF469062 | EF469091 | EF469109 | |
| ARSEF 5407 | AY636080 | |||||
| ARSEF 5593 | AY636081 | |||||
| ARSEF 5354 | AF339577 | AF339527 | ||||
| TNS F18550 | KJ878911 | KJ878875 | KJ878959 | |||
| OSC 128575 | EF469126 | EF469079 | EF469064 | EF469093 | EF469110 | |
| NHJ 12525 | EF469125 | EF469078 | EF469063 | EF469092 | EF469111 | |
| OSC 128578 | DQ522556 | DQ518770 | DQ522345 | DQ522391 | DQ522445 | |
| OSC 151902 | KJ878912 | KJ878876 | KJ878991 | KJ878945 | ||
| TNS F18563 | KJ878877 | KJ878992 | ||||
| TNS F27117 | KJ878878 | |||||
| NHJ 3582 | EU369097 | EU369034 | EU369015 | |||
| NHJ 3497 | EU369096 | EU369033 | EU369014 | EU369053 | EU369074 | |
| RCEF 3833 | KJ878913 | KJ878879 | KJ878960 | KJ878993 | ||
| OSC 151901 | KJ878914 | KJ878880 | KJ878961 | KJ878994 | ||
| CBS 744.73 | EF468987 | EF468841 | EF468786 | EF468892 | ||
| OSC 110987 | EF468950 | EF468805 | EF468744 | EF468852 | ||
| OSC 110988 | EF468951 | EF468804 | EF468745 | EF468853 | ||
| OSC 128580 | DQ522543 | DQ518757 | DQ522326 | DQ522371 | DQ522423 | |
| ARSEF 5692 | DQ522540 | DQ518754 | DQ522322 | DQ522368 | DQ522418 | |
| CEM 303 | KJ878915 | KJ878881 | KJ878962 | KJ878995 | ||
| ARSEF 5498 | DQ522541 | DQ518755 | DQ522323 | DQ522419 | ||
| OSC 128576 | DQ522542 | DQ518756 | DQ522324 | DQ522369 | DQ522420 | |
| CEM 1762 | KJ878916 | KJ878882 | KJ878963 | KJ878996 | ||
| CEM 1763 | KJ878883 | KJ878964 | KJ878997 | |||
| NBRC 106961 | JN941727 | JN941414 | JN992461 | |||
| NBRC 106962 | JN941726 | JN941415 | JN992460 | |||
| NHJ 12581 | EF468973 | EF468831 | EF468775 | EF468930 | ||
| NHJ 12582 | EF468975 | EF468830 | EF468771 | EF468926 | ||
| OSC 151910 | KJ878918 | KJ878885 | KJ878999 | |||
| OSC 151911 | KJ878919 | KJ878886 | KJ878966 | KJ879000 | ||
| OSC 151912 | KJ878920 | KJ878887 | KJ878967 | KJ879001 | ||
| OSC 110989 | EF468808 | EF468748 | EF468856 | |||
| KEW 53484 | EF468954 | EF468809 | EF468749 | EF468857 | EF468911 | |
| TNS F18565 | KJ878921 | KJ878888 | KJ878968 | KJ879002 | KJ878946 | |
| OSC 151908 | KJ878922 | KJ878889 | KJ879003 | KJ878947 | ||
| EFCC 3101 | EF468955 | EF468810 | EF468750 | EF468858 | EF468913 | |
| EFCC 8572 | EF468956 | EF468811 | EF468751 | EF468859 | EF468912 | |
| OSC 151906 | KJ878923 | KJ878890 | KJ878969 | |||
| EFCC 10125 | EF468957 | EF468812 | EF468752 | EF468860 | EF468914 | |
| OSC 106404 | AY489690 | AY489722 | AY489617 | AY489651 | ||
| OSC 128577 | DQ522546 | DQ518760 | DQ522329 | DQ522374 | DQ522427 | |
| EFCC 7295 | EF468958 | EF468862 | EF468915 | |||
| EFCC 7315 | EF468959 | EF468753 | EF468861 | EF468916 | ||
| OSC 151913 | KJ878924 | KJ878891 | KJ878970 | KJ879004 | KJ878948 | |
| EFCC 6814 | EF468817 | EF468757 | EF468865 | |||
| TNS F18448 | KJ878925 | KJ878892 | KJ878971 | KJ879005 | ||
| HMAS_199600 | KJ878926 | KJ878972 | KJ879006 | KJ878949 | ||
| OSC 110993 | DQ522548 | DQ518762 | DQ522331 | DQ522376 | ||
| HMAS_199620 | KJ878929 | KJ878895 | KJ878975 | KJ879009 | ||
| CEM 1710 | KJ878927 | KJ878893 | KJ878973 | KJ879007 | ||
| TNS 27120 | KJ878928 | KJ878894 | KJ878974 | KJ879008 | ||
| OSC 151903 | KJ878930 | KJ878896 | KJ878976 | KJ879010 | ||
| EFCC 9247 | EF468963 | EF468818 | EF468758 | EF468866 | EF468920 | |
| OSC 110994 | DQ522549 | DQ518763 | DQ522333 | DQ522378 | ||
| NHJ 12994 | EU369106 | EU369041 | EU369024 | EU369063 | EU369084 | |
| TNS-F 30044 | GU904208 | GU904209 | GU904210 | |||
| TNS F18430 | KJ878931 | KJ878897 | KJ878977 | KJ879011 | ||
| OSC 110995 | DQ522550 | DQ518764 | DQ522334 | DQ522379 | DQ522430 | |
| OSC 151914 | KJ878932 | KJ878978 | KJ879012 | KJ878950 | ||
| NHJ 12522 | EF468970 | EF468825 | EF468764 | EF468873 | EF468923 | |
| NHJ 12529 | EF468969 | EF468824 | EF468765 | EF468872 | EF468922 | |
| NBRC 101751 | KF049614 | KF049633 | KF049688 | KF049650 | ||
| EFCC 7287 | EF468971 | EF468827 | EF468767 | EF468874 | EF468924 | |
| KEW 78842 | EF468972 | EF468828 | EF468875 | EF468925 | ||
| TNS F18521 | KJ878933 | KJ878898 | KJ878979 | KJ879013 | ||
| TNS F18495 | KJ878937 | KJ878901 | KJ879017 | |||
| OSC 110997 | EF468976 | EF468774 | EF468879 | EF468929 | ||
| OSC 151904 | KJ878934 | KJ878899 | KJ878980 | KJ879014 | ||
| OSC 151905 | KJ878935 | KJ878981 | KJ879015 | KJ878951 | ||
| OSC 151909 | KJ878936 | KJ878900 | KJ878982 | KJ879016 | KJ878952 | |
| OSC 110998 | DQ522551 | DQ518765 | DQ522336 | DQ522381 | DQ522432 | |
| OSC 110999 | EF468982 | EF468837 | EF468777 | EF468882 | EF468931 | |
| OSC 111000 | DQ522552 | DQ518766 | DQ522337 | DQ522382 | DQ522433 | |
| CEM 160 | AB027330 | AB027376 | ||||
| OSC 128574 | DQ522554 | DQ518768 | DQ522339 | DQ522385 | DQ522436 | |
| OSC 111003 | EF468985 | EF468839 | EF468779 | EF468885 | EF468933 | |
| ARSEF 5365 | DQ522555 | DQ518769 | DQ522340 | DQ522386 | DQ522437 | |
| HMAS_199604 | KJ878938 | KJ878902 | KJ879018 | KJ878953 | ||
| ARSEF 2181 | AF339583 | AF339534 | EF468790 | EF468896 | ||
| CBS 431.87 | AY624188 | EF468844 | EF468791 | EF468897 | EF468940 | |
| CBS 284.36 | AY624189 | AY624227 | EF468792 | EF468898 | EF468941 | |
| ARSEF 5472 | AF339569 | AF339519 | DQ118747 | DQ127238 | ||
| TNS F18537 | KJ878903 | KJ878983 | KJ878954 | |||
| TNS F18487 | KF049609 | KF049628 | KF049683 | |||
| NBRC 101740 | KF049610 | KF049629 | KF049684 | KF049646 | ||
| ARSEF 1424 | KF049615 | AY259544 | DQ118754 | DQ127245 | KF049671 | |
| BCC 1881 | KF049618 | KF049636 | KF049692 | KF049674 | ||
| BCC 1682 | KF049620 | KF049638 | KF049694 | |||
| NHJ4286 | KF049621 | KF049639 | KF049695 | KF049654 | KF049676 | |
| BCC2325 | KF049622 | KF049640 | KF049696 | KF049655 | KF049677 | |
| NBRC 101742 | KF049611 | KF049630 | KF049685 | KF049647 | KF049669 | |
| TNS F18481 | KF049612 | KF049631 | KF049686 | KF049648 | ||
| TNS F18547 | KF0496613 | KF049632 | KF049687 | KF049649 | KF049670 | |
| SU-65 | DQ118742 | DQ118753 | DQ127244 | |||
| EFCC 5566 | KF049627 | KF049682 | ||||
| KF049690 | KF049672 | |||||
| JB07.08.17_07b | KF049691 | KF049653 | KF049673 | |||
| BBC 2637 | KF049619 | KF049637 | KF049693 | KF049675 | ||
| BL4 | KF049623 | AY259545 | KF049697 | KF049656 | KF049678 | |
| HMAS_199613 | KJ878939 | KJ878904 | KJ878984 | KJ879019 | ||
| HMAS_199617 | KJ878940 | KJ878905 | KJ878985 | KJ879020 | ||
| TNS 16252 | KJ878941 | KJ878906 | KJ878986 | |||
| TNS 16250 | KJ878942 | KJ878987 | KJ879021 | |||
| NRRL 28025 | AF049153 | AF049173 |
Fig. 1.ML tree of Ophiocordycipitaceae obtained using RAxML to analyze the concatenated five gene dataset (SSU, LSU, TEF, RPB1, and RPB2). Proposed genus level names to protect are delimited, but names of individual species have not been changed on the leaves of the tree, to demonstrate the diversity of taxa sampled. Values above branches represent MLBP proportions greater than or equal to 70 % from 500 replicates. Inset tree shows the larger phylogeny of Hypocreales.
Proposed list of generic names in Ophiocordycipitaceae to be protected and their competing synonyms. Names to be protected are in bold type, and names previously synonymized are in blue.