Literature DB >> 25078159

What structural length scales can be detected by the spectral variance of a microscope image?

Lusik Cherkezyan, Hariharan Subramanian, Vadim Backman.   

Abstract

A spectroscopic microscope, configured to detect interference spectra of backscattered light in the far zone, quantifies the statistics of refractive-index (RI) distribution via the spectral variance (Σ˜<sup>2</sup>) of the acquired bright-field image. Its sensitivity to subtle structural changes within weakly scattering, label-free media at subdiffraction scales shows great promise in fields from material science to medical diagnostics. We further investigate the length-scale sensitivity of Σ˜ and reveal that, in theory, it can detect RI fluctuations at any spatial frequency whatsoever. Based on a 5% noise floor, Σ˜ detects scales from ∼22 to 200-700 nm (exact values depend on sample structure and thickness). In an example involving mass-density distribution characteristic of biological cell nuclei, we suggest the level of chromatin organization, which can be quantified via Σ˜.

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Year:  2014        PMID: 25078159      PMCID: PMC4317340          DOI: 10.1364/OL.39.004290

Source DB:  PubMed          Journal:  Opt Lett        ISSN: 0146-9592            Impact factor:   3.776


  5 in total

1.  Mounting media for phase microscope specimens.

Authors:  G C CROSSMON
Journal:  Stain Technol       Date:  1949-10

2.  Structural length-scale sensitivities of reflectance measurements in continuous random media under the Born approximation.

Authors:  Andrew J Radosevich; Ji Yi; Jeremy D Rogers; Vadim Backman
Journal:  Opt Lett       Date:  2012-12-15       Impact factor: 3.776

3.  Interferometric spectroscopy of scattered light can quantify the statistics of subdiffractional refractive-index fluctuations.

Authors:  L Cherkezyan; I Capoglu; H Subramanian; J D Rogers; D Damania; A Taflove; V Backman
Journal:  Phys Rev Lett       Date:  2013-07-19       Impact factor: 9.161

4.  Partial-wave microscopic spectroscopy detects subwavelength refractive index fluctuations: an application to cancer diagnosis.

Authors:  Hariharan Subramanian; Prabhakar Pradhan; Yang Liu; Ilker R Capoglu; Jeremy D Rogers; Hemant K Roy; Randall E Brand; Vadim Backman
Journal:  Opt Lett       Date:  2009-02-15       Impact factor: 3.776

5.  Nanoscale changes in chromatin organization represent the initial steps of tumorigenesis: a transmission electron microscopy study.

Authors:  Lusik Cherkezyan; Yolanda Stypula-Cyrus; Hariharan Subramanian; Craig White; Mart Dela Cruz; Ramesh K Wali; Michael J Goldberg; Laura K Bianchi; Hemant K Roy; Vadim Backman
Journal:  BMC Cancer       Date:  2014-03-14       Impact factor: 4.430

  5 in total
  12 in total

1.  Reconstruction of explicit structural properties at the nanoscale via spectroscopic microscopy.

Authors:  Lusik Cherkezyan; Di Zhang; Hariharan Subramanian; Allen Taflove; Vadim Backman
Journal:  J Biomed Opt       Date:  2016-02       Impact factor: 3.170

Review 2.  Review of interferometric spectroscopy of scattered light for the quantification of subdiffractional structure of biomaterials.

Authors:  Lusik Cherkezyan; Di Zhang; Hariharan Subramanian; Ilker Capoglu; Allen Taflove; Vadim Backman
Journal:  J Biomed Opt       Date:  2017-03-01       Impact factor: 3.170

3.  Label-free imaging of the native, living cellular nanoarchitecture using partial-wave spectroscopic microscopy.

Authors:  Luay M Almassalha; Greta M Bauer; John E Chandler; Scott Gladstein; Lusik Cherkezyan; Yolanda Stypula-Cyrus; Samuel Weinberg; Di Zhang; Peder Thusgaard Ruhoff; Hemant K Roy; Hariharan Subramanian; Navdeep S Chandel; Igal Szleifer; Vadim Backman
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-04       Impact factor: 11.205

4.  Fiber-based visible and near infrared optical coherence tomography (vnOCT) enables quantitative elastic light scattering spectroscopy in human retina.

Authors:  Weiye Song; Libo Zhou; Sui Zhang; Steven Ness; Manishi Desai; Ji Yi
Journal:  Biomed Opt Express       Date:  2018-06-28       Impact factor: 3.732

5.  Spectroscopic microscopy can quantify the statistics of subdiffractional refractive-index fluctuations in media with random rough surfaces.

Authors:  Di Zhang; Lusik Cherkezyan; Ilker Capoglu; Hariharan Subramanian; John Chandler; Sebastian Thompson; Allen Taflove; Vadim Backman
Journal:  Opt Lett       Date:  2015-11-01       Impact factor: 3.776

6.  Nanoscale refractive index fluctuations detected via sparse spectral microscopy.

Authors:  John E Chandler; Lusik Cherkezyan; Hariharan Subramanian; Vadim Backman
Journal:  Biomed Opt Express       Date:  2016-02-19       Impact factor: 3.732

7.  Refractive Index Imaging of Cells with Variable-Angle Near-Total Internal Reflection (TIR) Microscopy.

Authors:  Kevin P Bohannon; Ronald W Holz; Daniel Axelrod
Journal:  Microsc Microanal       Date:  2017-09-18       Impact factor: 4.127

8.  Procedures for risk-stratification of lung cancer using buccal nanocytology.

Authors:  H Subramanian; P Viswanathan; L Cherkezyan; R Iyengar; S Rozhok; M Verleye; J Derbas; J Czarnecki; H K Roy; V Backman
Journal:  Biomed Opt Express       Date:  2016-08-31       Impact factor: 3.732

9.  Macrogenomic engineering via modulation of the scaling of chromatin packing density.

Authors:  Luay M Almassalha; Greta M Bauer; Wenli Wu; Lusik Cherkezyan; Di Zhang; Alexis Kendra; Scott Gladstein; John E Chandler; David VanDerway; Brandon-Luke L Seagle; Andrey Ugolkov; Daniel D Billadeau; Thomas V O'Halloran; Andrew P Mazar; Hemant K Roy; Igal Szleifer; Shohreh Shahabi; Vadim Backman
Journal:  Nat Biomed Eng       Date:  2017-11-06       Impact factor: 25.671

10.  Colocalization of cellular nanostructure using confocal fluorescence and partial wave spectroscopy.

Authors:  John E Chandler; Yolanda Stypula-Cyrus; Luay Almassalha; Greta Bauer; Leah Bowen; Hariharan Subramanian; Igal Szleifer; Vadim Backman
Journal:  J Biophotonics       Date:  2016-04-25       Impact factor: 3.207

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