| Literature DB >> 25075330 |
Palash Sanphui1, Geetha Bolla1, Ashwini Nangia1, Vladimir Chernyshev2.
Abstract
Entities:
Keywords: cocrystal; hydrate; melt crystallization; piperazine; powder X-ray diffraction; structure determination from powder data (SDPD)
Year: 2014 PMID: 25075330 PMCID: PMC4062091 DOI: 10.1107/S2052252514004229
Source DB: PubMed Journal: IUCrJ ISSN: 2052-2525 Impact factor: 4.769
Crystallographic details for the ACM cocrystals and salts
| ACMINA | ACMPAM | ACMCPR | ACMPABA | ACMPPZ | |
|---|---|---|---|---|---|
| CCDC No. | 971219 | 971221 | 971218 | 971220 | 971222 |
| Crystal data | |||||
| Chemical formula | C21H18ClNO6 C6H6N2O | C21H18ClNO6 C6H6N2O | C21H18ClNO6 C6H11NO | C21H18ClNO6 C7H7NO2 | (C21H17ClNO6 )2 C4H12N2 2+ |
|
| 537.94 | 537.94 | 528.97 | 552.96 | 917.76 |
| Crystal system, space group | Monoclinic, | Monoclinic, | Triclinic, | Monoclinic, | Triclinic, |
|
| 298(2) | 298(2) | 298(2) | 298(2) | 298(2) |
|
| 11.8900(8) | 21.7202(15) | 11.9406(16) | 16.959(6) | 7.3994(15) |
|
| 4.9621(3) | 5.0077(14) | 21.3081(19) | 4.7993(15) | 25.6703(19) |
|
| 21.4281(14) | 11.8457(17) | 5.1030(14) | 17.285(5) | 5.8254(17) |
| , , () | 90, 90.663(6), 90 | 90, 93.954(13), 90 | 92.373(15), 93.003(16), 85.308(17) | 90, 113.55(4), 90 | 90.162(17), 98.598(16), 98.315(19) |
|
| 1264.16(14) | 1285.4(4) | 1291.3(4) | 1289.7(7) | 1082.2(4) |
|
| 2 | 2 | 2 | 2 | 1 |
| calc (gcm3) | 1.413 | 1.390 | 1.360 | 1.424 | 1.408 |
| (mm1) | 0.204 | 1.763 | 1.728 | 0.204 | 1.939 |
| Radiation | Mo | Cu | Cu | Mo | Cu |
| range () | 2.8526.37 | 1.5040.00 | 1.5040.00 | 2.6224.71 | 1.5040.00 |
| Specimen shape, size (mm) | 0.28 0.16 0.12 | Flat sheet, 15 1 | Flat sheet, 15 1 | 0.24 0.12 0.12 | Flat sheet, 15 1 |
| Data collection | |||||
| No. of measured, independent and observed reflections | 5380, 4397, 2600 | 4680, 3522, 1521 | |||
|
| 0.027 | 0.064 | |||
| values () | max = 26.4, min = 2.9 | 2min = 3.001, 2max = 80.011, 2step = 0.017 | 2min = 3.000, 2max = 80.000, 2step = 0.008 | max = 24.7, min = 2.6 | 2min = 3.003, 2max = 75.015, 2step = 0.017 |
| Distance from source to specimen (mm) | 0.625 | 0.588 | |||
| Refinement | |||||
|
|
|
|
|
|
|
| No. of reflections/data points | 4397 | 4531 | 9626 | 3522 | 4237 |
| No. of parameters | 357 | 185 | 183 | 366 | 175 |
| No. of restraints | 3 | 125 | 123 | 4 | 107 |
| max, min (e 3) | 0.19, 0.19 | 0.25, 0.26 | |||
| Flack parameter | 0.03(11) | 0.2(3) | |||
Hydrogen-bond geometry (, ) for the crystal structures
H-atom positions are normalized to average neutron-derived distances: CH = 1.089, NH = 1.015, OH = 0.993 (Allen Bruno, 2010 ▶).
| H |
|
| Symmetry code | |
|---|---|---|---|---|
| ACMINA (1:1) | ||||
| N2H2 | 1.97 | 2.977(3) | 179 |
|
| N2H2 | 1.92 | 2.889(3) | 161 |
|
| O6H6 | 1.65 | 2.636(3) | 177 |
|
| C2H2O6 | 2.29 | 3.369(3) | 174 |
|
| C12H12O1 | 2.32 | 2.892(2) | 111 | Intramolecular |
| C17H17 | 2.46 | 3.483(3) | 156 |
|
| C20H20 | 2.42 | 3.471(3) | 164 |
|
| ACMPAM (1:1) | ||||
| N2H2 | 1.91 | 2.866(4) | 156 |
|
| N2H2 | 2.32 | 2.722(4) | 102 | Intramolecular |
| O4H4O7 | 1.55 | 2.518(4) | 167 |
|
| C2H2O4 | 2.27 | 3.333(4) | 166 |
|
| C20H20 | 2.49 | 3.507(4) | 156 |
|
| C26H26O2 | 2.42 | 3.455(4) | 159 |
|
| ACMCPR (1:1) | ||||
| N2H2 | 1.97 | 2.955(4) | 165 |
|
| O4H4O7 | 1.90 | 2.665(4) | 133 |
|
| C18H18 | 2.18 | 3.094(5) | 140 |
|
| C23H23 | 2.56 | 3.401(5) | 134 |
|
| C27H27 | 2.08 | 2.972(4) | 138 |
|
| ACMPABA (1:1) | ||||
| N2H2 | 2.02 | 2.965(4) | 156 |
|
| N2H2 | 2.24 | 3.215(5) | 163 |
|
| O7H7 | 1.66 | 2.632(4) | 168 |
|
| C12H12O1 | 2.35 | 2.888(6) | 109 | Intramolecular |
| C15H15O2 | 2.40 | 3.458(6) | 166 |
|
| C17H17 | 2.42 | 3.493(6) | 172 |
|
| C18H18 | 2.38 | 3.437(6) | 164 |
|
| C25H25O1 | 2.33 | 3.267(6) | 144 |
|
| ACMPPZ (1:0.5) | ||||
| N2H2 | 2.51 | 3.226(4) | 128 |
|
| N2H2 | 1.63 | 2.619(3) | 166 |
|
| N2H2 | 1.80 | 2.798(3) | 172 |
|
| C2H2O1 | 2.35 | 3.202(4) | 134 |
|
| C13H13O1 | 2.13 | 2.739(4) | 113 | Intramolecular |
| C17H17 | 2.20 | 3.098(4) | 139 |
|
| C20H20 | 2.34 | 3.055(4) | 122 |
|
| C22H22 | 2.33 | 3.362(4) | 158 |
|
| C22H22 | 2.34 | 3.020(4) | 119 |
|
Figure 1(a) O—H⋯N and N—H⋯O hydrogen bonds between ACM and INA. (b) INA molecules form an amide catemer chain through their anti N—H bonds. (c) R 6 6(48) ring motif in the ACM–INA cocrystal.
Figure 2(a) Acid⋯amide heterosynthon in the ACM–PAM cocrystal. (b) N—H⋯O and auxiliary C—H⋯O interactions in the extended molecular arrangement.
Figure 3(a) Amide⋯amide homosynthon between CPR molecules, accompanied by O—H⋯O interactions between ACM and the coformer in the ACM–CPR cocrystal structure. (b) Tetramer units extend via auxiliary C—H⋯Cl interactions.
Coformers used to make cocrystal/salts with ACM and corresponding pK a values
pK a values were calculated in water using a SPARC pK a calculator, http://archemcalc.com/sparc/test/login.cfm (accessed 16 February 2014).
| p | p | Cocrystal/salt | |
|---|---|---|---|
| ACM | 3.57 | ||
| NAM | 3.31 | 0.26 | Cocrystal |
| INA | 4.17 | 0.6 | Cocrystal |
| PAM | 2.95 | 0.62 | Cocrystal |
| CPR | 0.90 | 2.67 | Cocrystal |
| PABA | 2.41 | 1.16 | Cocrystal |
| PPZ | 9.72 | 6.15 | Salt |
Figure 4(a) N—H⋯O and O—H⋯O hydrogen bonds make a one-dimensional chain along the c-axis. (b) Extended packing in the ACM–PABA crystal structure, viewed down the b-axis. The acidic proton of ACM could not be located from the X-ray data and is not included in the figure.
Figure 5(a) Ionic N+—H⋯O− interactions between two ACMs and one PPZ molecule. (b) Tetramer R 4 4(18) ring motif involving two ACM carboxylate and one piperazinium cation form a ladder-like structure.
Summary statistics of acidpyridineamide heterosynthons in cocrystals in the CSD
| Heterosynthon | NAM | INA | PAM |
|---|---|---|---|
| Acidpyridine | 27 | 50 | 0 |
| Acidamide | 7 | 2 | 0 |
| Both | 10 | 13 | 0 |
| Total | 44 | 65 | 0 |
Figure 6Comparison of heterosynthons in nicotinamide and isonicotinamide cocrystals with carboxylic acids present in the CSD.
Figure 7(a) Two-dimensional supramolecular construct of ACM–INA and ACM–PAM cocrystals, indicated by XPac analysis. (b) Inter-planar angular deviation (δp, x-axis) versus angular deviation (δa, y-axis) (both in °) indicates a dissimilarity index of 5.9, which means that the two cocrystals form the same two-dimensional supramolecular construct.
Figure 8(a) Flexible torsion angles in ACM. (b) Molecular overlay of ACM polymorphs and its binary systems indicates torsional flexibility in the carboxamide and alkyl chain of the glycolic acid ester.
Torsion angle () variation in ACM crystal structures (see Fig. 8 ▶)
| 1 | 2 | 3 | 4 | 5 | |
|---|---|---|---|---|---|
| ACM form (I) | 27.9 | 53.3 | 175.2 | 179.9 | 78.4 |
| ACM form (II) | 35.7 | 38.0 | 172.7 | 172.3 | 81.3 |
| ACMH | 154.2 | 48.6 | 7.8 | 180.2 | 68.5 |
| ACM-INA | 29.8 | 49.4 | 179.8 | 178.0 | 79.9 |
| ACMPAM | 23.4 | 51.9 | 179.9 | 160.6 | 96.4 |
| ACMCPR | 35.3 | 40.1 | 172.3 | 160.1 | 76.8 |
| ACMPABA | 43.6 | 40.6 | 179.5 | 179.8 | 75.7 |
| ACMPPZ | 18.2 | 36.4 | 46.9 | 148.8 | 149.9 |
Figure 9PXRD overlay (black trace) of (a) ACM–INA and (c) ACM–PABA with their calculated X-ray diffraction lines (red trace). Rietveld plots for (b) ACM–PAM, (d) ACM–CPR and (e) ACM–PPZ show the experimental (black dots), calculated lines (red) and difference (blue) plots. The vertical bars denote calculated positions of the diffraction peaks. (f) PXRD of ACM–NAM (1:1).
IR frequency (cm1) of the acemetacin cocrystals/salts
| NH stretch | CO stretch | CO stretch | CO stretch (coformer) | |
|---|---|---|---|---|
| ACM | 1751.2, 1726.5, 1665.8 | 1229.5 | ||
| ACMNAM | 3403.4, 3304.9, 3216.1 | 1735.2, 1669.0 | 1226.2 | 1698.3, 1681.0 |
| ACMINA | 3395.1, 3311.3, 3264.5, 3208.7 | 1727.0, 1672.6 | 1227.8, 1213.2 | 1677.2 |
| ACMPAM | 3445.6, 3309.4 | 1741.4, 1717.9, 1667.8 | 1232.6 | 1683.3 |
| ACMCPR | 3445.4 (broad) | 1738.3, 1668.9 | 1234.1 | 1636.0 (broad) |
| ACMPABA | 3464.7, 3402.2, 3332.9, 3227.2 | 1746.4, 1716.1, 1643.7 | 1234.5, 1216.4 | 1687.3, 1662.7 |
| ACMPPZ | 3423.0 (broad) | 1721.9, 1679.0 | 1219.6 |
|
Figure 10DSC endotherms of acemetacin and its multi-component molecular crystals.
Melting point (C) of acemetacin cocrystal/salts
| M.p. | M.p. of coformer | |
|---|---|---|
| ACM | 150.6151.3 | |
| ACMNAM | 115.3116.7 | 128131 |
| ACMINA | 138.4140.4 | 158159 |
| ACMPAM | 111.6113.1 | 109110 |
| ACMCPR | 92.893.9 | 6870 |
| ACMPABA | 158.2159.2 | 187189 |
| ACMPPZ | 173.2178.1 | 106108 |
Figure 11(a) 13C SS NMR and (b) 15N SS NMR spectra of acemetacin cocrystals and salts.
Dissolution of acemetacin cocrystals/salts in pH 7 buffer medium at 37C
| Absorption coefficient (, mM1cm1) | Solubility at 24h (gL1) | IDR (mgcm2min1) | Solubility (gL1) of the coformer | Residue after 4h in IDR | Residue after 24h slurry | |
|---|---|---|---|---|---|---|
| ACM | 7.71 | 3.2 (2.0) | 2.118 (3.4) | ACMH | ACMH | |
| ACMH | 6.49 | 1.6 | 0.618 | ACMH | ACMH | |
| ACMNAM | 5.93 | 22.0 (13.7) | 3.223 (5.2) | 800 | ACMNAM | ACMH |
| ACMINA | 7.06 | 21.0 (13.1) | 1.165 (1.8) | 192 | ACMINA | ACMH |
| ACMPAM | 6.78 | 17.2 (10.7) | 2.902 (4.7) | 180 | ACMPAM | ACMPAM, ACMH |
| ACMCPR | 7.15 | 20.5 (12.8) | 2.195 (3.5) | 4560 | ACMCPR | ACMH |
| ACMPABA | 6.77 | 21.6 (13.5) | 1.631 (2.6) | 7 | ACMPABA | ACMPABA |
| ACMPPZ | 6.78 | 26.8 (16.7) | 3.260 (5.3) | 150 | ACMPPZ | ACMPPZ |
Value in parenthesis is the enhancement multiple compared to the least soluble ACMH.
Figure 12IDR measurements of acemetacin cocrystals/salts in pH 7 buffer medium.
Figure 13SEM images of acemetacin cocrystals and salts to show the crystal morphology.
Figure 14PXRD comparison (black trace) of (a) ACM–PABA and (b) ACM–PPZ salt after 24 h slurry with the calculated X-ray diffraction lines of the salt (red trace) and ACM hydrate (ACMH, blue). Both of these binary systems are relatively stable compared with the cocrystals, which transformed to ACMH in pH 7 buffer. There is a higher amorphous content in the recovered ACM–PPZ salt (halo + lines). The product stability in slurry medium was confirmed by FT–IR.