Literature DB >> 25075269

Smoothing fields of weighted collections with applications to diffusion MRI processing.

Gunnar A Sigurdsson1, Jerry L Prince1.   

Abstract

Using modern diffusion weighted magnetic resonance imaging protocols, the orientations of multiple neuronal fiber tracts within each voxel can be estimated. Further analysis of these populations, including application of fiber tracking and tract segmentation methods, is often hindered by lack of spatial smoothness of the estimated orientations. For example, a single noisy voxel can cause a fiber tracking method to switch tracts in a simple crossing tract geometry. In this work, a generalized spatial smoothing framework that handles multiple orientations as well as their fractional contributions within each voxel is proposed. The approach estimates an optimal fuzzy correspondence of orientations and fractional contributions between voxels and smooths only between these correspondences. Avoiding a requirement to obtain exact correspondences of orientations reduces smoothing anomalies due to propagation of erroneous correspondences around noisy voxels. Phantom experiments are used to demonstrate both visual and quantitative improvements in postprocessing steps. Improvement over smoothing in the measurement domain is also demonstrated using both phantoms and in vivo human data.

Entities:  

Keywords:  Correspondence; Diffusion MRI; HARDI; Multi-tensor; Multiple directions; Multiple orientations; Smoothing

Year:  2014        PMID: 25075269      PMCID: PMC4112117          DOI: 10.1117/12.2043959

Source DB:  PubMed          Journal:  Proc SPIE Int Soc Opt Eng        ISSN: 0277-786X


  8 in total

1.  Adaptive anisotropic noise filtering for magnitude MR data.

Authors:  J Sijbers; A J den Dekker; A Van der Linden; T M Verhoye; D Van Dyck
Journal:  Magn Reson Imaging       Date:  1999-12       Impact factor: 2.546

2.  Multitensor approach for analysis and tracking of complex fiber configurations.

Authors:  B W Kreher; J F Schneider; I Mader; E Martin; J Hennig; K A Il'yasov
Journal:  Magn Reson Med       Date:  2005-11       Impact factor: 4.668

3.  Noise removal in magnetic resonance diffusion tensor imaging.

Authors:  Bin Chen; Edward W Hsu
Journal:  Magn Reson Med       Date:  2005-08       Impact factor: 4.668

4.  Geometrically constrained two-tensor model for crossing tracts in DWI.

Authors:  Sharon Peled; Ola Friman; Ferenc Jolesz; Carl-Fredrik Westin
Journal:  Magn Reson Imaging       Date:  2006-09-12       Impact factor: 2.546

5.  Diffusion tensor imaging: structural adaptive smoothing.

Authors:  Karsten Tabelow; Jörg Polzehl; Vladimir Spokoiny; Henning U Voss
Journal:  Neuroimage       Date:  2007-10-28       Impact factor: 6.556

6.  Resolution of crossing fibers with constrained compressed sensing using diffusion tensor MRI.

Authors:  Bennett A Landman; John A Bogovic; Hanlin Wan; Fatma El Zahraa ElShahaby; Pierre-Louis Bazin; Jerry L Prince
Journal:  Neuroimage       Date:  2011-10-14       Impact factor: 6.556

7.  Three-dimensional tracking of axonal projections in the brain by magnetic resonance imaging.

Authors:  S Mori; B J Crain; V P Chacko; P C van Zijl
Journal:  Ann Neurol       Date:  1999-02       Impact factor: 10.422

8.  Quantitative evaluation of 10 tractography algorithms on a realistic diffusion MR phantom.

Authors:  Pierre Fillard; Maxime Descoteaux; Alvina Goh; Sylvain Gouttard; Ben Jeurissen; James Malcolm; Alonso Ramirez-Manzanares; Marco Reisert; Ken Sakaie; Fatima Tensaouti; Ting Yo; Jean-François Mangin; Cyril Poupon
Journal:  Neuroimage       Date:  2011-01-20       Impact factor: 6.556

  8 in total
  2 in total

1.  Estimation of fiber orientations using neighborhood information.

Authors:  Chuyang Ye; Jiachen Zhuo; Rao P Gullapalli; Jerry L Prince
Journal:  Med Image Anal       Date:  2016-05-16       Impact factor: 8.545

2.  Dictionary-based fiber orientation estimation with improved spatial consistency.

Authors:  Chuyang Ye; Jerry L Prince
Journal:  Med Image Anal       Date:  2017-11-23       Impact factor: 8.545

  2 in total

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