Literature DB >> 25071180

Efficient UV-induced charge separation and recombination in an 8-oxoguanine-containing dinucleotide.

Yuyuan Zhang1, Jordan Dood1, Ashley A Beckstead1, Xi-Bo Li2, Khiem V Nguyen2, Cynthia J Burrows3, Roberto Improta4, Bern Kohler5.   

Abstract

During the early evolution of life, 8-oxo-7,8-dihydro-2'-deoxyguanosine (O) may have functioned as a proto-flavin capable of repairing cyclobutane pyrimidine dimers in DNA or RNA by photoinduced electron transfer using longer wavelength UVB radiation. To investigate the ability of O to act as an excited-state electron donor, a dinucleotide mimic of the FADH2 cofactor containing O at the 5'-end and 2'-deoxyadenosine at the 3'-end was studied by femtosecond transient absorption spectroscopy in aqueous solution. Following excitation with a UV pulse, a broadband mid-IR pulse probed vibrational modes of ground-state and electronically excited molecules in the double-bond stretching region. Global analysis of time- and frequency-resolved transient absorption data coupled with ab initio quantum mechanical calculations reveal vibrational marker bands of nucleobase radical ions formed by electron transfer from O to 2'-deoxyadenosine. The quantum yield of charge separation is 0.4 at 265 nm, but decreases to 0.1 at 295 nm. Charge recombination occurs in 60 ps before the O radical cation can lose a deuteron to water. Kinetic and thermodynamic considerations strongly suggest that all nucleobases can undergo ultrafast charge separation when π-stacked in DNA or RNA. Interbase charge transfer is proposed to be a major decay pathway for UV excited states of nucleic acids of great importance for photostability as well as photoredox activity.

Entities:  

Keywords:  DNA charge transfer states; DNA photophysics; ab initio calculations; photoreactivation; time-resolved vibrational spectroscopy

Mesh:

Substances:

Year:  2014        PMID: 25071180      PMCID: PMC4136581          DOI: 10.1073/pnas.1404411111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

Review 1.  Global and target analysis of time-resolved spectra.

Authors:  Ivo H M van Stokkum; Delmar S Larsen; Rienk van Grondelle
Journal:  Biochim Biophys Acta       Date:  2004-07-09

2.  Contrasting the excited-state dynamics of the photoactive yellow protein chromophore: protein versus solvent environments.

Authors:  Mikas Vengris; Michael A van der Horst; Goran Zgrablic; Ivo H M van Stokkum; Stefan Haacke; Majed Chergui; Klaas J Hellingwerf; Rienk van Grondelle; Delmar S Larsen
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

3.  Interplay between "neutral" and "charge-transfer" excimers rules the excited state decay in adenine-rich polynucleotides.

Authors:  Roberto Improta; Vincenzo Barone
Journal:  Angew Chem Int Ed Engl       Date:  2011-10-19       Impact factor: 15.336

4.  Geometries and properties of excited states in the gas phase and in solution: theory and application of a time-dependent density functional theory polarizable continuum model.

Authors:  Giovanni Scalmani; Michael J Frisch; Benedetta Mennucci; Jacopo Tomasi; Roberto Cammi; Vincenzo Barone
Journal:  J Chem Phys       Date:  2006-03-07       Impact factor: 3.488

5.  Both intra- and interstrand charge-transfer excited states in aqueous B-DNA are present at energies comparable to, or just above, the (1)pipi* excitonic bright states.

Authors:  Adrian W Lange; John M Herbert
Journal:  J Am Chem Soc       Date:  2009-03-25       Impact factor: 15.419

6.  Dynamics and mechanism of cyclobutane pyrimidine dimer repair by DNA photolyase.

Authors:  Zheyun Liu; Chuang Tan; Xunmin Guo; Ya-Ting Kao; Jiang Li; Lijuan Wang; Aziz Sancar; Dongping Zhong
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-29       Impact factor: 11.205

7.  A prebiotic role for 8-oxoguanosine as a flavin mimic in pyrimidine dimer photorepair.

Authors:  Khiem Van Nguyen; Cynthia J Burrows
Journal:  J Am Chem Soc       Date:  2011-08-30       Impact factor: 15.419

8.  Monitoring the direct and indirect damage of DNA bases and polynucleotides by using time-resolved infrared spectroscopy.

Authors:  Marina K Kuimova; Alexander J Cowan; Pavel Matousek; Anthony W Parker; Xue Zhong Sun; Michael Towrie; Michael W George
Journal:  Proc Natl Acad Sci U S A       Date:  2006-02-07       Impact factor: 11.205

9.  Base stacking in adenosine dimers revealed by femtosecond transient absorption spectroscopy.

Authors:  Jinquan Chen; Bern Kohler
Journal:  J Am Chem Soc       Date:  2014-04-15       Impact factor: 15.419

10.  Solution structure of the DNA damage lesion 8-oxoguanosine from ultraviolet resonance Raman spectroscopy.

Authors:  Namrata Jayanth; Srinivas Ramachandran; Mrinalini Puranik
Journal:  J Phys Chem A       Date:  2009-02-03       Impact factor: 2.781

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  4 in total

Review 1.  Studying the excited electronic states of guanine rich DNA quadruplexes by quantum mechanical methods: main achievements and perspectives.

Authors:  Lara Martínez-Fernández; Luciana Esposito; Roberto Improta
Journal:  Photochem Photobiol Sci       Date:  2020-04-15       Impact factor: 3.982

2.  Exciton decay mechanism in DNA single strands: back-electron transfer and ultrafast base motions.

Authors:  Benjamin Bauer; Rahul Sharma; Majed Chergui; Malte Oppermann
Journal:  Chem Sci       Date:  2022-04-19       Impact factor: 9.969

3.  Role of Electron-Driven Proton-Transfer Processes in the Ultrafast Deactivation of Photoexcited Anionic 8-oxoGuanine-Adenine and 8-oxoGuanine-Cytosine Base Pairs.

Authors:  Xiuxiu Wu; Tolga N V Karsili; Wolfgang Domcke
Journal:  Molecules       Date:  2017-01-14       Impact factor: 4.411

4.  Multiple Decay Mechanisms and 2D-UV Spectroscopic Fingerprints of Singlet Excited Solvated Adenine-Uracil Monophosphate.

Authors:  Quansong Li; Angelo Giussani; Javier Segarra-Martí; Artur Nenov; Ivan Rivalta; Alexander A Voityuk; Shaul Mukamel; Daniel Roca-Sanjuán; Marco Garavelli; Lluís Blancafort
Journal:  Chemistry       Date:  2016-04-26       Impact factor: 5.236

  4 in total

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