Literature DB >> 25064607

Tb927.10.6900 encodes the glucosyltransferase involved in synthesis of base J in Trypanosoma brucei.

Aarthi Sekar1, Christopher Merritt1, Loren Baugh1, Kenneth Stuart2, Peter J Myler3.   

Abstract

Base J is a DNA modification found in the genome of Trypanosoma brucei and all other kinetoplastids analyzed, where it replaces a small fraction of Ts, mainly in telomeric and chromosome-internal transcription initiation and termination regions. The synthesis of base J is a two-step process whereby a specific T is converted to HOMedU (hydroxymethyldeoxyuridine) and subsequently glucosylated to generate J. The thymidine hydroxylases (JPB1 and JBP2) that catalyze the first step have been characterized, but the identity of the glucosyltransferase catalyzing the second step has proven elusive. Recent bioinformatic analysis by Iyer et al. (Nucleic Acids Res 2013;41:7635) suggested that Tb927.10.6900 encodes the glucosyltransferase (HmdUGT) responsible for converting HOMedU to J in T. brucei. We now present experimental evidence to validate this hypothesis; null mutants of Tb927.10.6900 are unable to synthesize base J. Orthologues from related kinetoplastids show only modest conservation, with several insertion sequences found in those from Leishmania and related genera.
Copyright © 2014 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  DNA modification; Epigenetics; Glucosyltransferase; Transcriptional read-through; Trypanosomatids

Mesh:

Substances:

Year:  2014        PMID: 25064607      PMCID: PMC4206709          DOI: 10.1016/j.molbiopara.2014.07.005

Source DB:  PubMed          Journal:  Mol Biochem Parasitol        ISSN: 0166-6851            Impact factor:   1.759


  21 in total

1.  The telomeric GGGTTA repeats of Trypanosoma brucei contain the hypermodified base J in both strands.

Authors:  F van Leeuwen; E R Wijsman; E Kuyl-Yeheskiely; G A van der Marel; J H van Boom; P Borst
Journal:  Nucleic Acids Res       Date:  1996-07-01       Impact factor: 16.971

2.  Localization of the modified base J in telomeric VSG gene expression sites of Trypanosoma brucei.

Authors:  F van Leeuwen; E R Wijsman; R Kieft; G A van der Marel; J H van Boom; P Borst
Journal:  Genes Dev       Date:  1997-12-01       Impact factor: 11.361

3.  Possible DNA modification in GC dinucleotides of Trypanosoma brucei telomeric sequences; relationship with antigen gene transcription.

Authors:  E Pays; M F Delauw; M Laurent; M Steinert
Journal:  Nucleic Acids Res       Date:  1984-07-11       Impact factor: 16.971

4.  beta-D-glucosyl-hydroxymethyluracil: a novel modified base present in the DNA of the parasitic protozoan T. brucei.

Authors:  J H Gommers-Ampt; F Van Leeuwen; A L de Beer; J F Vliegenthart; M Dizdaroglu; J A Kowalak; P F Crain; P Borst
Journal:  Cell       Date:  1993-12-17       Impact factor: 41.582

5.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

Authors:  J D Thompson; D G Higgins; T J Gibson
Journal:  Nucleic Acids Res       Date:  1994-11-11       Impact factor: 16.971

6.  Modification of telomeric DNA in Trypanosoma brucei; a role in antigenic variation?

Authors:  A Bernards; N van Harten-Loosbroek; P Borst
Journal:  Nucleic Acids Res       Date:  1984-05-25       Impact factor: 16.971

7.  Glucosylated hydroxymethyluracil, DNA base J, prevents transcriptional readthrough in Leishmania.

Authors:  Henri G A M van Luenen; Carol Farris; Sabrina Jan; Paul-Andre Genest; Pankaj Tripathi; Arno Velds; Ron M Kerkhoven; Marja Nieuwland; Andrew Haydock; Gowthaman Ramasamy; Saara Vainio; Tatjana Heidebrecht; Anastassis Perrakis; Ludo Pagie; Bas van Steensel; Peter J Myler; Piet Borst
Journal:  Cell       Date:  2012-08-31       Impact factor: 41.582

8.  Tandemly repeated DNA is a target for the partial replacement of thymine by beta-D-glucosyl-hydroxymethyluracil in Trypanosoma brucei.

Authors:  F van Leeuwen; R Kieft; M Cross; P Borst
Journal:  Mol Biochem Parasitol       Date:  2000-07       Impact factor: 1.759

9.  Identification of essential and non-essential protein kinases by a fusion PCR method for efficient production of transgenic Trypanosoma brucei.

Authors:  Christopher Merritt; Kenneth Stuart
Journal:  Mol Biochem Parasitol       Date:  2013-05-16       Impact factor: 1.759

10.  Identification of the glucosyltransferase that converts hydroxymethyluracil to base J in the trypanosomatid genome.

Authors:  Whitney Bullard; Jessica Lopes da Rosa-Spiegler; Shuo Liu; Yinsheng Wang; Robert Sabatini
Journal:  J Biol Chem       Date:  2014-06-02       Impact factor: 5.157

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  8 in total

1.  The domain architecture of the protozoan protein J-DNA-binding protein 1 suggests synergy between base J DNA binding and thymidine hydroxylase activity.

Authors:  Athanassios Adamopoulos; Tatjana Heidebrecht; Jeroen Roosendaal; Wouter G Touw; Isabelle Q Phan; Jos Beijnen; Anastassis Perrakis
Journal:  J Biol Chem       Date:  2019-07-10       Impact factor: 5.157

2.  Base J represses genes at the end of polycistronic gene clusters in Leishmania major by promoting RNAP II termination.

Authors:  David L Reynolds; Brigitte T Hofmeister; Laura Cliffe; T Nicolai Siegel; Britta A Anderson; Stephen M Beverley; Robert J Schmitz; Robert Sabatini
Journal:  Mol Microbiol       Date:  2016-06-01       Impact factor: 3.501

3.  Base J glucosyltransferase does not regulate the sequence specificity of J synthesis in trypanosomatid telomeric DNA.

Authors:  Whitney Bullard; Laura Cliffe; Pengcheng Wang; Yinsheng Wang; Robert Sabatini
Journal:  Mol Biochem Parasitol       Date:  2016-01-24       Impact factor: 1.759

4.  Defining the sequence requirements for the positioning of base J in DNA using SMRT sequencing.

Authors:  Paul-Andre Genest; Loren Baugh; Alex Taipale; Wanqi Zhao; Sabrina Jan; Henri G A M van Luenen; Jonas Korlach; Tyson Clark; Khai Luong; Matthew Boitano; Steve Turner; Peter J Myler; Piet Borst
Journal:  Nucleic Acids Res       Date:  2015-02-06       Impact factor: 16.971

5.  A method for the efficient and selective identification of 5-hydroxymethyluracil in genomic DNA.

Authors:  Whitney Bullard; Rudo Kieft; Robert Sabatini
Journal:  Biol Methods Protoc       Date:  2017-01-25

Review 6.  Transcriptional Regulation of Telomeric Expression Sites and Antigenic Variation in Trypanosomes.

Authors:  Igor Cestari; Ken Stuart
Journal:  Curr Genomics       Date:  2018-02       Impact factor: 2.236

Review 7.  Epigenetic Regulation of Transcription in Trypanosomatid Protozoa.

Authors:  Santiago Martínez-Calvillo; Gabriela Romero-Meza; Juan C Vizuet-de-Rueda; Luis E Florencio-Martínez; Rebeca Manning-Cela; Tomás Nepomuceno-Mejía
Journal:  Curr Genomics       Date:  2018-02       Impact factor: 2.236

8.  Histone H3 Variant Regulates RNA Polymerase II Transcription Termination and Dual Strand Transcription of siRNA Loci in Trypanosoma brucei.

Authors:  David Reynolds; Brigitte T Hofmeister; Laura Cliffe; Magdy Alabady; T Nicolai Siegel; Robert J Schmitz; Robert Sabatini
Journal:  PLoS Genet       Date:  2016-01-21       Impact factor: 5.917

  8 in total

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