Literature DB >> 26815240

Base J glucosyltransferase does not regulate the sequence specificity of J synthesis in trypanosomatid telomeric DNA.

Whitney Bullard1, Laura Cliffe1, Pengcheng Wang2, Yinsheng Wang3, Robert Sabatini4.   

Abstract

Telomeric DNA of trypanosomatids possesses a modified thymine base, called base J, that is synthesized in a two-step process; the base is hydroxylated by a thymidine hydroxylase forming hydroxymethyluracil (hmU) and a glucose moiety is then attached by the J-associated glucosyltransferase (JGT). To examine the importance of JGT in modifiying specific thymine in DNA, we used a Leishmania episome system to demonstrate that the telomeric repeat (GGGTTA) stimulates J synthesis in vivo while mutant telomeric sequences (GGGTTT, GGGATT, and GGGAAA) do not. Utilizing an in vitro GT assay we find that JGT can glycosylate hmU within any sequence with no significant change in Km or kcat, even mutant telomeric sequences that are unable to be J-modified in vivo. The data suggests that JGT possesses no DNA sequence specificity in vitro, lending support to the hypothesis that the specificity of base J synthesis is not at the level of the JGT reaction.
Copyright © 2016 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Base J; Epigenetic; Glucosyltransferase; RNA polymerase II transcription; Trypanosomatid

Mesh:

Substances:

Year:  2016        PMID: 26815240      PMCID: PMC4889113          DOI: 10.1016/j.molbiopara.2016.01.005

Source DB:  PubMed          Journal:  Mol Biochem Parasitol        ISSN: 0166-6851            Impact factor:   1.759


  20 in total

1.  Evidence that J-binding protein 2 is a thymidine hydroxylase catalyzing the first step in the biosynthesis of DNA base J.

Authors:  Saara Vainio; Paul-André Genest; Bas ter Riet; Henri van Luenen; Piet Borst
Journal:  Mol Biochem Parasitol       Date:  2008-12-09       Impact factor: 1.759

2.  The modified DNA base beta-D-glucosylhydroxymethyluracil confers resistance to micrococcal nuclease and is incompletely recovered by 32P-postlabeling.

Authors:  F van Leeuwen; M de Kort; G A van der Marel; J H van Boom; P Borst
Journal:  Anal Biochem       Date:  1998-05-01       Impact factor: 3.365

3.  Epigenetic regulation of polymerase II transcription initiation in Trypanosoma cruzi: modulation of nucleosome abundance, histone modification, and polymerase occupancy by O-linked thymine DNA glucosylation.

Authors:  Dilrukshi Ekanayake; Robert Sabatini
Journal:  Eukaryot Cell       Date:  2011-09-16

4.  Glucosylated hydroxymethyluracil, DNA base J, prevents transcriptional readthrough in Leishmania.

Authors:  Henri G A M van Luenen; Carol Farris; Sabrina Jan; Paul-Andre Genest; Pankaj Tripathi; Arno Velds; Ron M Kerkhoven; Marja Nieuwland; Andrew Haydock; Gowthaman Ramasamy; Saara Vainio; Tatjana Heidebrecht; Anastassis Perrakis; Ludo Pagie; Bas van Steensel; Peter J Myler; Piet Borst
Journal:  Cell       Date:  2012-08-31       Impact factor: 41.582

5.  JBP1 and JBP2 proteins are Fe2+/2-oxoglutarate-dependent dioxygenases regulating hydroxylation of thymidine residues in trypanosome DNA.

Authors:  Laura J Cliffe; Gwen Hirsch; Jin Wang; Dilrukshi Ekanayake; Whitney Bullard; Muhan Hu; Yinsheng Wang; Robert Sabatini
Journal:  J Biol Chem       Date:  2012-04-18       Impact factor: 5.157

6.  J-binding protein increases the level and retention of the unusual base J in trypanosome DNA.

Authors:  Mike Cross; Rudo Kieft; Robert Sabatini; Anita Dirks-Mulder; Inês Chaves; Piet Borst
Journal:  Mol Microbiol       Date:  2002-10       Impact factor: 3.501

7.  Identification of the glucosyltransferase that converts hydroxymethyluracil to base J in the trypanosomatid genome.

Authors:  Whitney Bullard; Jessica Lopes da Rosa-Spiegler; Shuo Liu; Yinsheng Wang; Robert Sabatini
Journal:  J Biol Chem       Date:  2014-06-02       Impact factor: 5.157

8.  The protein that binds to DNA base J in trypanosomatids has features of a thymidine hydroxylase.

Authors:  Zhong Yu; Paul-André Genest; Bas ter Riet; Kate Sweeney; Courtney DiPaolo; Rudo Kieft; Evangelos Christodoulou; Anastassis Perrakis; Jana M Simmons; Robert P Hausinger; Henri G A M van Luenen; Daniel J Rigden; Robert Sabatini; Piet Borst
Journal:  Nucleic Acids Res       Date:  2007-03-27       Impact factor: 16.971

9.  Defining the sequence requirements for the positioning of base J in DNA using SMRT sequencing.

Authors:  Paul-Andre Genest; Loren Baugh; Alex Taipale; Wanqi Zhao; Sabrina Jan; Henri G A M van Luenen; Jonas Korlach; Tyson Clark; Khai Luong; Matthew Boitano; Steve Turner; Peter J Myler; Piet Borst
Journal:  Nucleic Acids Res       Date:  2015-02-06       Impact factor: 16.971

10.  Regulation of transcription termination by glucosylated hydroxymethyluracil, base J, in Leishmania major and Trypanosoma brucei.

Authors:  David Reynolds; Laura Cliffe; Konrad U Förstner; Chung-Chau Hon; T Nicolai Siegel; Robert Sabatini
Journal:  Nucleic Acids Res       Date:  2014-08-07       Impact factor: 16.971

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  1 in total

1.  A method for the efficient and selective identification of 5-hydroxymethyluracil in genomic DNA.

Authors:  Whitney Bullard; Rudo Kieft; Robert Sabatini
Journal:  Biol Methods Protoc       Date:  2017-01-25
  1 in total

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