Literature DB >> 2506355

Some aspects of the organization and evolution of the genetic code.

M Di Giulio1.   

Abstract

In this paper, I define a measure of the relative position of each amino acid in the genetic code by means of a 21-dimensional vector describing its potential for mutation, in a single step, to each of the other amino acids, or to a chain termination codon. This measure allows us to make a systematic investigation of the type and number of the physicochemical properties of the amino acids that were involved in evolution. The polar character and size of amino acids are identified in this analysis as properties that played a leading role in the evolutionary history of the genetic code. The application of cluster analysis and discriminant analysis reveals the characteristics of the structural organization of the genetic code. Finally, I suggest the existence of a relationship between the molecular weight of the amino acids and the number of synonymous codons.

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Year:  1989        PMID: 2506355     DOI: 10.1007/bf02100202

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  34 in total

1.  The evolution of a universal genetic code.

Authors:  J T Wong
Journal:  Proc Natl Acad Sci U S A       Date:  1976-07       Impact factor: 11.205

2.  Construction of the mycoplasma evolutionary tree from 5S rRNA sequence data.

Authors:  M J Rogers; J Simmons; R T Walker; W G Weisburg; C R Woese; R S Tanner; I M Robinson; D A Stahl; G Olsen; R H Leach
Journal:  Proc Natl Acad Sci U S A       Date:  1985-02       Impact factor: 11.205

3.  Two types of amino acid substitutions in protein evolution.

Authors:  T Miyata; S Miyazawa; T Yasunaga
Journal:  J Mol Evol       Date:  1979-03-15       Impact factor: 2.395

4.  [Partition coefficients of amino acids, nucleobases, nucleosides and nucleotides in a saline solvent system].

Authors:  J P Garel; D Filliol; P Mandel
Journal:  J Chromatogr       Date:  1973-04-25

5.  The characterization of amino acid sequences in proteins by statistical methods.

Authors:  J M Zimmerman; N Eliezer; R Simha
Journal:  J Theor Biol       Date:  1968-11       Impact factor: 2.691

6.  The molecular basis for the genetic code.

Authors:  C R Woese; D H Dugre; W C Saxinger; S A Dugre
Journal:  Proc Natl Acad Sci U S A       Date:  1966-04       Impact factor: 11.205

7.  Role of minimization of chemical distances between amino acids in the evolution of the genetic code.

Authors:  J T Wong
Journal:  Proc Natl Acad Sci U S A       Date:  1980-02       Impact factor: 11.205

8.  Role of the amino-acid "code" and of selection for conformation in the evolution of proteins.

Authors:  C J Epstein
Journal:  Nature       Date:  1966-04-02       Impact factor: 49.962

9.  Triplet nucleotide-amino-acid pairing; a stereochemical basis for the division between protein and non-protein amino-acids.

Authors:  P Dunnill
Journal:  Nature       Date:  1966-06-18       Impact factor: 49.962

10.  A multivariate study of the relationship between the genetic code and the physical-chemical properties of amino acids.

Authors:  M Sjöström; S Wold
Journal:  J Mol Evol       Date:  1985       Impact factor: 2.395

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  17 in total

1.  Testing a biosynthetic theory of the genetic code: fact or artifact?

Authors:  T A Ronneberg; L F Landweber; S J Freeland
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-05       Impact factor: 11.205

2.  The evolution of aminoacyl-tRNA synthetases, the biosynthetic pathways of amino acids and the genetic code.

Authors:  M Di Giulio
Journal:  Orig Life Evol Biosph       Date:  1992       Impact factor: 1.950

3.  The rules of variation: amino acid exchange according to the rotating circular genetic code.

Authors:  Fernando Castro-Chavez
Journal:  J Theor Biol       Date:  2010-04-03       Impact factor: 2.691

4.  tRNA acceptor-stem and anticodon bases embed separate features of amino acid chemistry.

Authors:  Charles W Carter; Richard Wolfenden
Journal:  RNA Biol       Date:  2015-11-23       Impact factor: 4.652

5.  The origin of the genetic code: matter of metabolism or physicochemical determinism?

Authors:  Massimo Di Giulio
Journal:  J Mol Evol       Date:  2013-10-26       Impact factor: 2.395

6.  The regularities of the changes of amino acid physico-chemical properties within the genetic code.

Authors:  I Z Siemion
Journal:  Amino Acids       Date:  1995-03       Impact factor: 3.520

7.  A quantitative measure of error minimization in the genetic code.

Authors:  D Haig; L D Hurst
Journal:  J Mol Evol       Date:  1991-11       Impact factor: 2.395

8.  The beta-sheets of proteins, the biosynthetic relationships between amino acids, and the origin of the genetic code.

Authors:  M Di Giulio
Journal:  Orig Life Evol Biosph       Date:  1996-12       Impact factor: 1.950

9.  A Non-neutral Origin for Error Minimization in the Origin of the Genetic Code.

Authors:  Massimo Di Giulio
Journal:  J Mol Evol       Date:  2018-10-25       Impact factor: 2.395

10.  Prediction of physical-chemical properties of amino acids from genetic code.

Authors:  L Frappat; A Sciarrino; P Sorba
Journal:  J Biol Phys       Date:  2002-03       Impact factor: 1.365

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