Literature DB >> 25047958

The synthetic biology toolbox for tuning gene expression in yeast.

Heidi Redden1, Nicholas Morse2, Hal S Alper3,2.   

Abstract

Saccharomyces cerevisiae can serve as a key production platform for biofuels, nutraceuticals, industrial compounds, and therapeutic proteins. Over the recent years, synthetic biology tools and libraries have expanded in yeast to provide newfound control over regulation and synthetic circuits. This review provides an update on the status of the synthetic biology toolbox in yeast for use as a cell factory. Specifically, we discuss the impact of plasmid selection and composition, promoter, terminator, transcription factor, and aptamer selection. In doing so, we highlight documented interactions between these components, current states of development, and applications that demonstrate the utility of these parts with a particular focus on synthetic gene expression control. © FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  aptamers; promoters; synthetic biology; terminators; yeast

Mesh:

Year:  2015        PMID: 25047958     DOI: 10.1111/1567-1364.12188

Source DB:  PubMed          Journal:  FEMS Yeast Res        ISSN: 1567-1356            Impact factor:   2.796


  22 in total

Review 1.  Recent advances in the applications of promoter engineering for the optimization of metabolite biosynthesis.

Authors:  Ning Xu; Liang Wei; Jun Liu
Journal:  World J Microbiol Biotechnol       Date:  2019-01-31       Impact factor: 3.312

Review 2.  How to train your microbe: methods for dynamically characterizing gene networks.

Authors:  Sebastian M Castillo-Hair; Oleg A Igoshin; Jeffrey J Tabor
Journal:  Curr Opin Microbiol       Date:  2015-02-10       Impact factor: 7.934

3.  Assessment of Cre-lox and CRISPR-Cas9 as tools for recycling of multiple-integrated selection markers in Saccharomyces cerevisiae.

Authors:  Hye Yun Moon; Gyu Hun Sim; Hyeon Jin Kim; Keunpil Kim; Hyun Ah Kang
Journal:  J Microbiol       Date:  2021-12-29       Impact factor: 3.422

4.  Robust and flexible platform for directed evolution of yeast genetic switches.

Authors:  Masahiro Tominaga; Kenta Nozaki; Daisuke Umeno; Jun Ishii; Akihiko Kondo
Journal:  Nat Commun       Date:  2021-03-23       Impact factor: 14.919

5.  The development and characterization of synthetic minimal yeast promoters.

Authors:  Heidi Redden; Hal S Alper
Journal:  Nat Commun       Date:  2015-07-17       Impact factor: 14.919

6.  Rapid generation of hypomorphic mutations.

Authors:  Laura L Arthur; Joyce J Chung; Preetam Jankirama; Kathryn M Keefer; Igor Kolotilin; Slavica Pavlovic-Djuranovic; Douglas L Chalker; Vojislava Grbic; Rachel Green; Rima Menassa; Heather L True; James B Skeath; Sergej Djuranovic
Journal:  Nat Commun       Date:  2017-01-20       Impact factor: 14.919

7.  Design and implementation of a synthetic pre-miR switch for controlling miRNA biogenesis in mammals.

Authors:  Janina Atanasov; Florian Groher; Julia E Weigand; Beatrix Suess
Journal:  Nucleic Acids Res       Date:  2017-12-15       Impact factor: 16.971

8.  High-throughput cellular RNA device engineering.

Authors:  Brent Townshend; Andrew B Kennedy; Joy S Xiang; Christina D Smolke
Journal:  Nat Methods       Date:  2015-08-10       Impact factor: 28.547

9.  EasyCloneMulti: A Set of Vectors for Simultaneous and Multiple Genomic Integrations in Saccharomyces cerevisiae.

Authors:  Jérôme Maury; Susanne M Germann; Simo Abdessamad Baallal Jacobsen; Niels B Jensen; Kanchana R Kildegaard; Markus J Herrgård; Konstantin Schneider; Anna Koza; Jochen Forster; Jens Nielsen; Irina Borodina
Journal:  PLoS One       Date:  2016-03-02       Impact factor: 3.240

10.  Engineering Saccharomyces cerevisiae for geranylgeraniol overproduction by combinatorial design.

Authors:  Tian-Qing Song; Ming-Zhu Ding; Fang Zhai; Duo Liu; Hong Liu; Wen-Hai Xiao; Ying-Jin Yuan
Journal:  Sci Rep       Date:  2017-11-08       Impact factor: 4.379

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