Literature DB >> 30706208

Recent advances in the applications of promoter engineering for the optimization of metabolite biosynthesis.

Ning Xu1,2, Liang Wei1,3, Jun Liu4,5.   

Abstract

Cell metabolism in living organisms is largely regulated at the transcriptional level, and the promoters are regarded as basic regulatory elements responsible for transcription initiation. Promoter engineering is an important technique to regulate gene expression and optimize metabolite biosynthesis in metabolic engineering and synthetic biology. The rational and precise control of gene expression in the multi-gene pathways can significantly affect the metabolic flux distribution and maximize the production of specific metabolites. Thus, many efforts have been made to identify natural promoters, construct inducible or hybrid promoters, and design artificial promoters for fine-tuning specific gene expression at the transcriptional level and improving production levels of the metabolites of interest. In this review, we will briefly introduce the architecture and function of both prokaryotic and eukaryotic promoters, and provide an overview of several major approaches for promoter engineering. The recent achievements and advances by promoter engineering for the optimization of metabolite biosynthetic pathways in multiple widely-used model microorganism, including Escherichia coli, Corynebacterium glutamicum and Saccharomyces cerevisiae, will also be extensively discussed.

Entities:  

Keywords:  Gene expression; Pathway optimization; Promoter

Mesh:

Year:  2019        PMID: 30706208     DOI: 10.1007/s11274-019-2606-0

Source DB:  PubMed          Journal:  World J Microbiol Biotechnol        ISSN: 0959-3993            Impact factor:   3.312


  75 in total

1.  Bacterial promoter architecture: subsite structure of UP elements and interactions with the carboxy-terminal domain of the RNA polymerase alpha subunit.

Authors:  S T Estrem; W Ross; T Gaal; Z W Chen; W Niu; R H Ebright; R L Gourse
Journal:  Genes Dev       Date:  1999-08-15       Impact factor: 11.361

Review 2.  The RNA polymerase II core promoter: a key component in the regulation of gene expression.

Authors:  Jennifer E F Butler; James T Kadonaga
Journal:  Genes Dev       Date:  2002-10-15       Impact factor: 11.361

3.  Identification and analysis of 'extended -10' promoters in Escherichia coli.

Authors:  Jennie E Mitchell; Dongling Zheng; Stephen J W Busby; Stephen D Minchin
Journal:  Nucleic Acids Res       Date:  2003-08-15       Impact factor: 16.971

4.  Extracting relations between promoter sequences and their strengths from microarray data.

Authors:  Hisanori Kiryu; Taku Oshima; Kiyoshi Asai
Journal:  Bioinformatics       Date:  2004-10-28       Impact factor: 6.937

5.  Tuning genetic control through promoter engineering.

Authors:  Hal Alper; Curt Fischer; Elke Nevoigt; Gregory Stephanopoulos
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-25       Impact factor: 11.205

6.  Analysis of the Corynebacterium glutamicum dapA promoter.

Authors:  P Vasicová; M Pátek; J Nesvera; H Sahm; B Eikmanns
Journal:  J Bacteriol       Date:  1999-10       Impact factor: 3.490

7.  DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: a systematic study.

Authors:  T Burr; J Mitchell; A Kolb; S Minchin; S Busby
Journal:  Nucleic Acids Res       Date:  2000-05-01       Impact factor: 16.971

8.  The level of glucose-6-phosphate dehydrogenase activity strongly influences xylose fermentation and inhibitor sensitivity in recombinant Saccharomyces cerevisiae strains.

Authors:  Marie Jeppsson; Björn Johansson; Peter Ruhdal Jensen; Bärbel Hahn-Hägerdal; Marie F Gorwa-Grauslund
Journal:  Yeast       Date:  2003-11       Impact factor: 3.239

9.  Structural properties of promoters: similarities and differences between prokaryotes and eukaryotes.

Authors:  Aditi Kanhere; Manju Bansal
Journal:  Nucleic Acids Res       Date:  2005-06-06       Impact factor: 16.971

Review 10.  The sigma70 family of sigma factors.

Authors:  Mark S B Paget; John D Helmann
Journal:  Genome Biol       Date:  2003-01-03       Impact factor: 13.583

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  8 in total

1.  Saccharomyces cerevisiae as a Heterologous Host for Natural Products.

Authors:  Maximilian Otto; Dany Liu; Verena Siewers
Journal:  Methods Mol Biol       Date:  2022

2.  Bidirectional titration of yeast gene expression using a pooled CRISPR guide RNA approach.

Authors:  Emily K Bowman; Matthew Deaner; Jan-Fang Cheng; Robert Evans; Ernst Oberortner; Yasuo Yoshikuni; Hal S Alper
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-20       Impact factor: 11.205

Review 3.  Intelligent host engineering for metabolic flux optimisation in biotechnology.

Authors:  Lachlan J Munro; Douglas B Kell
Journal:  Biochem J       Date:  2021-10-29       Impact factor: 3.857

4.  A synthetic promoter system for well-controlled protein expression with different carbon sources in Saccharomyces cerevisiae.

Authors:  Jiliang Deng; Yanling Wu; Zhaohui Zheng; Nanzhu Chen; Xiaozhou Luo; Hongting Tang; Jay D Keasling
Journal:  Microb Cell Fact       Date:  2021-10-18       Impact factor: 5.328

5.  Development of a novel expression system in lactic acid bacteria controlled by a broad-host-range promoter PsrfA.

Authors:  Chengran Guan; Yuan Yuan; Yan Ma; Xin Wang; Chenchen Zhang; Maolin Lu; Ruixia Gu; Dawei Chen
Journal:  Microb Cell Fact       Date:  2022-02-15       Impact factor: 5.328

6.  Research progress of pathway and genome evolution in microbes.

Authors:  Chaoqun Huang; Chang Wang; Yunzi Luo
Journal:  Synth Syst Biotechnol       Date:  2022-02-14

Review 7.  Advances in biosynthesis of scopoletin.

Authors:  Bo-Tao He; Zhi-Hua Liu; Bing-Zhi Li; Ying-Jin Yuan
Journal:  Microb Cell Fact       Date:  2022-08-02       Impact factor: 6.352

8.  Optimization of hydrogenobyrinic acid biosynthesis in Escherichia coli using multi-level metabolic engineering strategies.

Authors:  Pingtao Jiang; Huan Fang; Jing Zhao; Huina Dong; Zhaoxia Jin; Dawei Zhang
Journal:  Microb Cell Fact       Date:  2020-06-01       Impact factor: 5.328

  8 in total

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