Literature DB >> 25041085

High-resolution time-resolved imaging of in vitro Arabidopsis rosette growth.

Stijn Dhondt1, Nathalie Gonzalez, Jonas Blomme, Liesbeth De Milde, Twiggy Van Daele, Dirk Van Akoleyen, Veronique Storme, Frederik Coppens, Gerrit T S Beemster, Dirk Inzé.   

Abstract

Although quantitative characterization of growth phenotypes is of key importance for the understanding of essential networks driving plant growth, the majority of growth-related genes are still being identified based on qualitative visual observations and/or single-endpoint quantitative measurements. We developed an in vitro growth imaging system (IGIS) to perform time-resolved analysis of rosette growth. In this system, Arabidopsis plants are grown in Petri dishes mounted on a rotating disk, and images of each plate are taken on an hourly basis. Automated image analysis was developed in order to obtain several growth-related parameters, such as projected rosette area, rosette relative growth rate, compactness and stockiness, over time. To illustrate the use of the platform and the resulting data, we present the results for the growth response of Col-0 plants subjected to three mild stress conditions. Although the reduction in rosette area was relatively similar at 19 days after stratification, the time-lapse analysis demonstrated that plants react differently to salt, osmotic and oxidative stress. The rosette area was altered at various time points during development, and leaf movement and shape parameters were also affected differently. We also used the IGIS to analyze in detail the growth behavior of mutants with enhanced leaf size. Analysis of several growth-related parameters over time in these mutants revealed several specificities in growth behavior, underlining the high complexity of leaf growth coordination. These results demonstrate that time-resolved imaging of in vitro rosette growth generates a better understanding of growth phenotypes than endpoint measurements.
© 2014 The Authors The Plant Journal © 2014 John Wiley & Sons Ltd.

Entities:  

Keywords:  Arabidopsis thaliana; growth dynamics; imaging; leaf movement; phenotyping platform; rosette; technical advance

Mesh:

Year:  2014        PMID: 25041085     DOI: 10.1111/tpj.12610

Source DB:  PubMed          Journal:  Plant J        ISSN: 0960-7412            Impact factor:   6.417


  15 in total

1.  The Mitochondrial DNA-Associated Protein SWIB5 Influences mtDNA Architecture and Homologous Recombination.

Authors:  Jonas Blomme; Olivier Van Aken; Jelle Van Leene; Teddy Jégu; Riet De Rycke; Michiel De Bruyne; Jasmien Vercruysse; Jonah Nolf; Twiggy Van Daele; Liesbeth De Milde; Mattias Vermeersch; Catherine Colas des Francs-Small; Geert De Jaeger; Moussa Benhamed; A Harvey Millar; Dirk Inzé; Nathalie Gonzalez
Journal:  Plant Cell       Date:  2017-04-18       Impact factor: 11.277

2.  Circadian, Carbon, and Light Control of Expansion Growth and Leaf Movement.

Authors:  Federico Apelt; David Breuer; Justyna Jadwiga Olas; Maria Grazia Annunziata; Anna Flis; Zoran Nikoloski; Friedrich Kragler; Mark Stitt
Journal:  Plant Physiol       Date:  2017-05-30       Impact factor: 8.340

3.  A Journey Through a Leaf: Phenomics Analysis of Leaf Growth in Arabidopsis thaliana.

Authors:  Hannes Vanhaeren; Nathalie Gonzalez; Dirk Inzé
Journal:  Arabidopsis Book       Date:  2015-07-22

4.  The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.

Authors:  Andrés Ritter; Sabrina Iñigo; Patricia Fernández-Calvo; Ken S Heyndrickx; Stijn Dhondt; Hua Shi; Liesbeth De Milde; Robin Vanden Bossche; Rebecca De Clercq; Dominique Eeckhout; Mily Ron; David E Somers; Dirk Inzé; Kris Gevaert; Geert De Jaeger; Klaas Vandepoele; Laurens Pauwels; Alain Goossens
Journal:  Nat Commun       Date:  2017-05-11       Impact factor: 14.919

5.  PlantSize Offers an Affordable, Non-destructive Method to Measure Plant Size and Color in Vitro.

Authors:  Dóra Faragó; László Sass; Ildikó Valkai; Norbert Andrási; László Szabados
Journal:  Front Plant Sci       Date:  2018-02-22       Impact factor: 5.753

6.  High-Throughput Phenotyping (HTP) Data Reveal Dosage Effect at Growth Stages in Arabidopsis thaliana Irradiated by Gamma Rays.

Authors:  Sungyul Chang; Unseok Lee; Min Jeong Hong; Yeong Deuk Jo; Jin-Beak Kim
Journal:  Plants (Basel)       Date:  2020-04-27

7.  Image-based methods for phenotyping growth dynamics and fitness components in Arabidopsis thaliana.

Authors:  François Vasseur; Justine Bresson; George Wang; Rebecca Schwab; Detlef Weigel
Journal:  Plant Methods       Date:  2018-07-26       Impact factor: 4.993

Review 8.  Decoding Plant-Environment Interactions That Influence Crop Agronomic Traits.

Authors:  Keiichi Mochida; Ryuei Nishii; Takashi Hirayama
Journal:  Plant Cell Physiol       Date:  2020-08-01       Impact factor: 4.927

Review 9.  Unlocking the potential of plant phenotyping data through integration and data-driven approaches.

Authors:  Frederik Coppens; Nathalie Wuyts; Dirk Inzé; Stijn Dhondt
Journal:  Curr Opin Syst Biol       Date:  2017-08

10.  A "Do-It-Yourself" phenotyping system: measuring growth and morphology throughout the diel cycle in rosette shaped plants.

Authors:  Andrei Dobrescu; Livia C T Scorza; Sotirios A Tsaftaris; Alistair J McCormick
Journal:  Plant Methods       Date:  2017-11-08       Impact factor: 4.993

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