Literature DB >> 25027655

Illuminating cell signalling with optogenetic tools.

Doug Tischer1, Orion D Weiner1.   

Abstract

The light-based control of ion channels has been transformative for the neurosciences, but the optogenetic toolkit does not stop there. An expanding number of proteins and cellular functions have been shown to be controlled by light, and the practical considerations in deciding between reversible optogenetic systems (such as systems that use light-oxygen-voltage domains, phytochrome proteins, cryptochrome proteins and the fluorescent protein Dronpa) are well defined. The field is moving beyond proof of concept to answering real biological questions, such as how cell signalling is regulated in space and time, that were difficult or impossible to address with previous tools.

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Year:  2014        PMID: 25027655      PMCID: PMC4145075          DOI: 10.1038/nrm3837

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  69 in total

1.  Dynamics of Dpp signaling and proliferation control.

Authors:  O Wartlick; P Mumcu; A Kicheva; T Bittig; C Seum; F Jülicher; M González-Gaitán
Journal:  Science       Date:  2011-03-04       Impact factor: 47.728

2.  Light control of plasma membrane recruitment using the Phy-PIF system.

Authors:  Jared E Toettcher; Delquin Gong; Wendell A Lim; Orion D Weiner
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

3.  Crystal structure of the photosensing module from a red/far-red light-absorbing plant phytochrome.

Authors:  E Sethe Burgie; Adam N Bussell; Joseph M Walker; Katarzyna Dubiel; Richard D Vierstra
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-30       Impact factor: 11.205

4.  Reversible protein inactivation by optogenetic trapping in cells.

Authors:  Sangkyu Lee; Hyerim Park; Taeyoon Kyung; Na Yeon Kim; Sungsoo Kim; Jihoon Kim; Won Do Heo
Journal:  Nat Methods       Date:  2014-05-04       Impact factor: 28.547

Review 5.  The development and application of optogenetics.

Authors:  Lief Fenno; Ofer Yizhar; Karl Deisseroth
Journal:  Annu Rev Neurosci       Date:  2011       Impact factor: 12.449

6.  Optogenetic control of protein kinase activity in mammalian cells.

Authors:  Sabrina Wend; Hanna J Wagner; Konrad Müller; Matias D Zurbriggen; Wilfried Weber; Gerald Radziwill
Journal:  ACS Synth Biol       Date:  2013-10-04       Impact factor: 5.110

7.  Light-based feedback for controlling intracellular signaling dynamics.

Authors:  Jared E Toettcher; Delquin Gong; Wendell A Lim; Orion D Weiner
Journal:  Nat Methods       Date:  2011-09-11       Impact factor: 28.547

8.  An optogenetic gene expression system with rapid activation and deactivation kinetics.

Authors:  Laura B Motta-Mena; Anna Reade; Michael J Mallory; Spencer Glantz; Orion D Weiner; Kristen W Lynch; Kevin H Gardner
Journal:  Nat Chem Biol       Date:  2014-01-12       Impact factor: 15.040

9.  Light-mediated kinetic control reveals the temporal effect of the Raf/MEK/ERK pathway in PC12 cell neurite outgrowth.

Authors:  Kai Zhang; Liting Duan; Qunxiang Ong; Ziliang Lin; Pooja Mahendra Varman; Kijung Sung; Bianxiao Cui
Journal:  PLoS One       Date:  2014-03-25       Impact factor: 3.240

10.  Signal amplification and transduction in phytochrome photosensors.

Authors:  Heikki Takala; Alexander Björling; Oskar Berntsson; Heli Lehtivuori; Stephan Niebling; Maria Hoernke; Irina Kosheleva; Robert Henning; Andreas Menzel; Janne A Ihalainen; Sebastian Westenhoff
Journal:  Nature       Date:  2014-04-30       Impact factor: 49.962

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  116 in total

1.  Predictive Spatiotemporal Manipulation of Signaling Perturbations Using Optogenetics.

Authors:  Leo Valon; Fred Etoc; Amanda Remorino; Florencia di Pietro; Xavier Morin; Maxime Dahan; Mathieu Coppey
Journal:  Biophys J       Date:  2015-11-03       Impact factor: 4.033

Review 2.  Integrative systems and synthetic biology of cell-matrix adhesion sites.

Authors:  Eli Zamir
Journal:  Cell Adh Migr       Date:  2016-02-06       Impact factor: 3.405

Review 3.  Development of photolabile protecting groups and their application to the optochemical control of cell signaling.

Authors:  Anirban Bardhan; Alexander Deiters
Journal:  Curr Opin Struct Biol       Date:  2019-05-25       Impact factor: 6.809

Review 4.  Chromatin regulation at the frontier of synthetic biology.

Authors:  Albert J Keung; J Keith Joung; Ahmad S Khalil; James J Collins
Journal:  Nat Rev Genet       Date:  2015-02-10       Impact factor: 53.242

5.  Blue light-mediated transcriptional activation and repression of gene expression in bacteria.

Authors:  Premkumar Jayaraman; Kavya Devarajan; Tze Kwang Chua; Hanzhong Zhang; Erry Gunawan; Chueh Loo Poh
Journal:  Nucleic Acids Res       Date:  2016-06-28       Impact factor: 16.971

6.  An optogenetic approach to control protein localization during embryogenesis of the sea urchin.

Authors:  Alicia Uchida; Mamiko Yajima
Journal:  Dev Biol       Date:  2018-06-26       Impact factor: 3.582

7.  Optogenetic interrogation of integrin αVβ3 function in endothelial cells.

Authors:  Zhongji Liao; Ana Kasirer-Friede; Sanford J Shattil
Journal:  J Cell Sci       Date:  2017-09-01       Impact factor: 5.285

Review 8.  Optogenetic Immunomodulation: Shedding Light on Antitumor Immunity.

Authors:  Peng Tan; Lian He; Gang Han; Yubin Zhou
Journal:  Trends Biotechnol       Date:  2016-09-28       Impact factor: 19.536

9.  Reversible optogenetic control of kinase activity during differentiation and embryonic development.

Authors:  Vishnu V Krishnamurthy; John S Khamo; Wenyan Mei; Aurora J Turgeon; Humza M Ashraf; Payel Mondal; Dil B Patel; Noah Risner; Ellen E Cho; Jing Yang; Kai Zhang
Journal:  Development       Date:  2016-10-03       Impact factor: 6.868

10.  Optogenetic toolkit reveals the role of Ca2+ sparklets in coordinated cell migration.

Authors:  Jin Man Kim; Minji Lee; Nury Kim; Won Do Heo
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-17       Impact factor: 11.205

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