Literature DB >> 25010574

Hydroxyl radical recycling in isoprene oxidation driven by hydrogen bonding and hydrogen tunneling: the upgraded LIM1 mechanism.

Jozef Peeters1, Jean-François Müller, Trissevgeni Stavrakou, Vinh Son Nguyen.   

Abstract

The Leuven isoprene mechanism, proposed earlier to aid in rationalizing the unexpectedly high hydroxyl radical (OH) concentrations in isoprene-rich, low-nitric-oxide (NO) regions ( Peeters ; et al. Phys. Chem. Chem. Phys . 2009 , 11 , 5935 ), is presented in an upgraded and extended version, LIM1. The kinetics of the crucial reactions in the proposed isoprene-peroxy radical interconversion and isomerization pathways are re-evaluated theoretically, on the basis of energy barriers computed at the much higher CCSD(T)/aug-cc-pVTZ//QCISD/6-311G(d,p) level of theory, and using multiconformer partition functions obtained at the M06-2X/6-311++G(3df,2p) level that, different from the B3LYP level used in our earlier work, accounts for the crucial London dispersion effects in the H-bonded systems involved. The steady-state fraction of the specific Z-δ-OH-peroxy radical isomers/conformers that can isomerize by a 1,6-H shift is shown to be largely governed by hydrogen-bond strengths, whereas their isomerization itself is found to occur quasi-exclusively by hydrogen atom tunneling. The isomer-specific Z-δ-OH-peroxy 1,6-H-shift rate coefficients are predicted to be of the order of 1 s(-1) at 298 K, but the experimentally accessible bulk rate coefficients, which have to be clearly distinguished from the former, are 2 orders of magnitude lower due to the very low Z-δ-OH-peroxy steady-state fractions that are only around or below 0.01 at low to moderate NO and depend on the peroxy lifetime. Two pathways subsequent to the peroxy radical 1,6-H shift are identified, the earlier predicted route yielding the photolabile hydroperoxy-methylbutenals (HPALDs), and a second, about equally important path, to dihydroperoxy-carbonyl peroxy radicals (di-HPCARP). Taking this into account, our predicted bulk peroxy isomerization rate coefficients are about a factor 1.8 higher than the available experimental results for HPALD production ( Crounse ; et al. Phys. Chem. Chem. Phys. 2011 , 13 , 13607 ), which is within the respective uncertainty margins. We also show that the experimental temperature dependence of the HPALD production rates as well as the observed kinetic isotope effect for per-deuterated isoprene support quantitatively our theoretical peroxy interconversion rates. Global modeling implementing LIM1 indicates that on average about 28% of the isoprene peroxys react via the 1,6-H-shift isomerization route, representing 100-150 Tg carbon per year. The fast photolysis of HPALDs we proposed earlier as primary OH regeneration mechanism ( Peeters and Muller . Phys. Chem. Chem. Phys . 2010 , 12 , 14227 ) found already experimental confirmation ( Wolfe ; et al. Phys. Chem. Chem. Phys. 2012 , 14 , 7276 ); based on further theoretical work in progress, reaction schemes are presented of the oxy coproduct radicals from HPALD photolysis and of the di-HPCARP radicals from the second pathway following peroxy isomerization that are both expected to initiate considerable additional OH recycling.

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Year:  2014        PMID: 25010574     DOI: 10.1021/jp5033146

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  20 in total

1.  Highly Oxygenated Organic Molecules (HOM) from Gas-Phase Autoxidation Involving Peroxy Radicals: A Key Contributor to Atmospheric Aerosol.

Authors:  Federico Bianchi; Theo Kurtén; Matthieu Riva; Claudia Mohr; Matti P Rissanen; Pontus Roldin; Torsten Berndt; John D Crounse; Paul O Wennberg; Thomas F Mentel; Jürgen Wildt; Heikki Junninen; Tuija Jokinen; Markku Kulmala; Douglas R Worsnop; Joel A Thornton; Neil Donahue; Henrik G Kjaergaard; Mikael Ehn
Journal:  Chem Rev       Date:  2019-02-25       Impact factor: 60.622

2.  Organic nitrate chemistry and its implications for nitrogen budgets in an isoprene- and monoterpene-rich atmosphere: constraints from aircraft (SEAC4RS) and ground-based (SOAS) observations in the Southeast US.

Authors:  J A Fisher; D J Jacob; K R Travis; P S Kim; E A Marais; C Chan Miller; K Yu; L Zhu; R M Yantosca; M P Sulprizio; J Mao; P O Wennberg; J D Crounse; A P Teng; T B Nguyen; J M St Clair; R C Cohen; P Romer; B A Nault; P J Wooldridge; J L Jimenez; P Campuzano-Jost; D A Day; W Hu; P B Shepson; F Xiong; D R Blake; A H Goldstein; P K Misztal; T F Hanisco; G M Wolfe; T B Ryerson; A Wisthaler; T Mikoviny
Journal:  Atmos Chem Phys       Date:  2016-05-17       Impact factor: 6.133

3.  Rapid production of highly oxidized molecules in isoprene aerosol via peroxy and alkoxy radical isomerization pathways in low and high NOx environments: Combined laboratory, computational and field studies.

Authors:  Mohammed Jaoui; Ivan R Piletic; Rafal Szmigielski; Krzysztof J Rudzinski; Michael Lewandowski; Theran P Riedel; Tadeusz E Kleindienst
Journal:  Sci Total Environ       Date:  2021-02-10       Impact factor: 10.753

4.  Anthropogenic monoterpenes aggravating ozone pollution.

Authors:  Haichao Wang; Xuefei Ma; Zhaofeng Tan; Hongli Wang; Xiaorui Chen; Shiyi Chen; Yaqin Gao; Ying Liu; Yuhan Liu; Xinping Yang; Bin Yuan; Limin Zeng; Cheng Huang; Keding Lu; Yuanhang Zhang
Journal:  Natl Sci Rev       Date:  2022-05-31       Impact factor: 23.178

5.  Isoprene photochemistry over the Amazon rainforest.

Authors:  Yingjun Liu; Joel Brito; Matthew R Dorris; Jean C Rivera-Rios; Roger Seco; Kelvin H Bates; Paulo Artaxo; Sergio Duvoisin; Frank N Keutsch; Saewung Kim; Allen H Goldstein; Alex B Guenther; Antonio O Manzi; Rodrigo A F Souza; Stephen R Springston; Thomas B Watson; Karena A McKinney; Scot T Martin
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-16       Impact factor: 11.205

6.  Why do Models Overestimate Surface Ozone in the Southeastern United States?

Authors:  Katherine R Travis; Daniel J Jacob; Jenny A Fisher; Patrick S Kim; Eloise A Marais; Lei Zhu; Karen Yu; Christopher C Miller; Robert M Yantosca; Melissa P Sulprizio; Anne M Thompson; Paul O Wennberg; John D Crounse; Jason M St Clair; Ronald C Cohen; Joshua L Laughner; Jack E Dibb; Samuel R Hall; Kirk Ullmann; Glenn M Wolfe; Illana B Pollack; Jeff Peischl; Jonathan A Neuman; Xianliang Zhou
Journal:  Atmos Chem Phys       Date:  2016-11-01       Impact factor: 6.133

7.  Observational constraints on glyoxal production from isoprene oxidation and its contribution to organic aerosol over the Southeast United States.

Authors:  Jingyi Li; Jingqiu Mao; Kyung-Eun Min; Rebecca A Washenfelder; Steven S Brown; Jennifer Kaiser; Frank N Keutsch; Rainer Volkamer; Glenn M Wolfe; Thomas F Hanisco; Ilana B Pollack; Thomas B Ryerson; Martin Graus; Jessica B Gilman; Brian M Lerner; Carsten Warneke; Joost A de Gouw; Ann M Middlebrook; Jin Liao; André Welti; Barron H Henderson; V Faye McNeill; Samuel R Hall; Kirk Ullmann; Leo J Donner; Fabien Paulot; Larry W Horowitz
Journal:  J Geophys Res Atmos       Date:  2016-07-31       Impact factor: 4.261

8.  Formaldehyde production from isoprene oxidation across NOx regimes.

Authors:  G M Wolfe; J Kaiser; T F Hanisco; F N Keutsch; J A de Gouw; J B Gilman; M Graus; C D Hatch; J Holloway; L W Horowitz; B H Lee; B M Lerner; F Lopez-Hilifiker; J Mao; M R Marvin; J Peischl; I B Pollack; J M Roberts; T B Ryerson; J A Thornton; P R Veres; C Warneke
Journal:  Atmos Chem Phys       Date:  2016-03-02       Impact factor: 6.133

9.  Barrierless Reactions with Loose Transition States Govern the Yields and Lifetimes of Organic Nitrates Derived from Isoprene.

Authors:  Ivan R Piletic; Edward O Edney; Libero J Bartolotti
Journal:  J Phys Chem A       Date:  2017-10-20       Impact factor: 2.781

10.  The reaction of methyl peroxy and hydroxyl radicals as a major source of atmospheric methanol.

Authors:  Jean-François Müller; Zhen Liu; Vinh Son Nguyen; Trissevgeni Stavrakou; Jeremy N Harvey; Jozef Peeters
Journal:  Nat Commun       Date:  2016-10-17       Impact factor: 14.919

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