Literature DB >> 25005091

Overexpression, purification, crystallization and structure determination of AspB, a putative aspartate aminotransferase from Mycobacterium tuberculosis.

Deepak Chandra Saroj1, Khundrakpam Herojit Singh1, Avishek Anant1, Bichitra K Biswal1.   

Abstract

A recombinant version of a putative aspartate aminotransferase, AspB (encoded by the ORF Rv3565), from Mycobacterium tuberculosis (Mtb) was overexpressed in M. smegmatis and purified to homogeneity using liquid chromatography. Crystals of AspB were grown in a condition consisting of 0.2 M ammonium phosphate monobasic, 0.1 M calcium chloride dihydrate employing the hanging-drop vapour-diffusion method at 298 K. The crystals diffracted to a limit of 2.50 Å resolution and belonged to the orthorhombic space group P2₁2₁2₁, with unit-cell parameters a=93.27, b=98.19, c=198.70 Å. The structure of AspB was solved by the molecular-replacement method using a putative aminotransferase from Silicibacter pomeroyi (PDB entry 3h14) as the search model. The template shares 46% amino-acid sequence identity with Mtb AspB. The crystal asymmetric unit contains four AspB molecules (the Mr of each is 42,035 Da).

Entities:  

Keywords:  AspB; Mycobacterium tuberculosis

Mesh:

Substances:

Year:  2014        PMID: 25005091      PMCID: PMC4089534          DOI: 10.1107/S2053230X14011820

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  25 in total

1.  Specific inhibition of the aspartate aminotransferase of Plasmodium falciparum.

Authors:  Carsten Wrenger; Ingrid B Müller; Anna J Schifferdecker; Rishabh Jain; Rositsa Jordanova; Matthew R Groves
Journal:  J Mol Biol       Date:  2010-11-16       Impact factor: 5.469

2.  Refinement and comparisons of the crystal structures of pig cytosolic aspartate aminotransferase and its complex with 2-methylaspartate.

Authors:  S Rhee; M M Silva; C C Hyde; P H Rogers; C M Metzler; D E Metzler; A Arnone
Journal:  J Biol Chem       Date:  1997-07-11       Impact factor: 5.157

3.  2.8-A-resolution crystal structure of an active-site mutant of aspartate aminotransferase from Escherichia coli.

Authors:  D L Smith; S C Almo; M D Toney; D Ringe
Journal:  Biochemistry       Date:  1989-10-03       Impact factor: 3.162

4.  Chloroplastic aspartate aminotransferase from Arabidopsis thaliana: an examination of the relationship between the structure of the gene and the spatial structure of the protein.

Authors:  S E Wilkie; R Lambert; M J Warren
Journal:  Biochem J       Date:  1996-11-01       Impact factor: 3.857

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

6.  Crystal structure of Saccharomyces cerevisiae cytosolic aspartate aminotransferase.

Authors:  C J Jeffery; T Barry; S Doonan; G A Petsko; D Ringe
Journal:  Protein Sci       Date:  1998-06       Impact factor: 6.725

7.  Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence.

Authors:  S T Cole; R Brosch; J Parkhill; T Garnier; C Churcher; D Harris; S V Gordon; K Eiglmeier; S Gas; C E Barry; F Tekaia; K Badcock; D Basham; D Brown; T Chillingworth; R Connor; R Davies; K Devlin; T Feltwell; S Gentles; N Hamlin; S Holroyd; T Hornsby; K Jagels; A Krogh; J McLean; S Moule; L Murphy; K Oliver; J Osborne; M A Quail; M A Rajandream; J Rogers; S Rutter; K Seeger; J Skelton; R Squares; S Squares; J E Sulston; K Taylor; S Whitehead; B G Barrell
Journal:  Nature       Date:  1998-06-11       Impact factor: 49.962

8.  Three-dimensional structure of a pyridoxal-phosphate-dependent enzyme, mitochondrial aspartate aminotransferase.

Authors:  G C Ford; G Eichele; J N Jansonius
Journal:  Proc Natl Acad Sci U S A       Date:  1980-05       Impact factor: 11.205

9.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

View more
  1 in total

Review 1.  Production of recombinant proteins in Mycobacterium smegmatis for structural and functional studies.

Authors:  Ghader Bashiri; Edward N Baker
Journal:  Protein Sci       Date:  2014-11-13       Impact factor: 6.725

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.