Literature DB >> 25005078

Structure of d(CCCCGGTACCGGGG)2 at 1.65 Å resolution.

Monica Purushothaman1, Anna Varghese1, Pradeep Kumar Mandal2, Namasivayam Gautham1.   

Abstract

The crystal structure of the tetradecanucleotide d(CCCCGGTACCGGGG)2 has previously been reported as an A-type double helix at a resolution of 2.5 Å in space group P41. Here, the structure of this sequence was determined at a significantly higher resolution of 1.65 Å in space group P4₁2₁2. The differences in crystal packing between the former and latter are described. The crystallographic asymmetric unit consists of one tetradecanucleotide duplex that spans more than one full turn of the A-helix. This structure allowed the unambiguous identification of solvent interactions.

Entities:  

Keywords:  A-DNA; double helix; right handed; tetradecanucleotide

Mesh:

Substances:

Year:  2014        PMID: 25005078      PMCID: PMC4089521          DOI: 10.1107/S2053230X1401084X

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  19 in total

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5.  An A-DNA triplet code: thermodynamic rules for predicting A- and B-DNA.

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Journal:  Proc Natl Acad Sci U S A       Date:  1995-07-03       Impact factor: 11.205

6.  Hydration patterns and intermolecular interactions in A-DNA crystal structures. Implications for DNA recognition.

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9.  Structure of d(CCCTAGGG): comparison with nine isomorphous octamer sequences reveals four distinct patterns of sequence-dependent intermolecular interactions.

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10.  Overview of the CCP4 suite and current developments.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18
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