Literature DB >> 24998893

Structure of the 3.3MDa, in vitro assembled, hubless bacteriophage T4 baseplate.

Moh Lan Yap1, Thomas Klose1, Pavel Plevka1, Anastasia Aksyuk1, Xinzheng Zhang1, Fumio Arisaka2, Michael G Rossmann3.   

Abstract

The bacteriophage T4 baseplate is the control center of the virus, where the recognition of an Escherichiacoli host by the long tail fibers is translated into a signal to initiate infection. The short tail fibers unfold from the baseplate for firm attachment to the host, followed by shrinkage of the tail sheath that causes the tail tube to enter and cross the periplasmic space ending with injection of the genome into the host. During this process, the 6.5MDa baseplate changes its structure from a "dome" shape to a "star" shape. An in vitro assembled hubless baseplate has been crystallized. It consists of six copies of the recombinantly expressed trimeric gene product (gp) 10, monomeric gp7, dimeric gp8, dimeric gp6 and monomeric gp53. The diffraction pattern extends, at most, to 4.0Å resolution. The known partial structures of gp10, gp8, and gp6 and their relative position in the baseplate derived from earlier electron microscopy studies were used for molecular replacement. An electron density map has been calculated based on molecular replacement, single isomorphous replacement with anomalous dispersion data and 2-fold non-crystallographic symmetry averaging between two baseplate wedges in the crystallographic asymmetric unit. The current electron density map indicates that there are structural changes in the gp6, gp8, and gp10 oligomers compared to their structures when separately crystallized. Additional density is also visible corresponding to gp7, gp53 and the unknown parts of gp10 and gp6.
Copyright © 2014 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Bacteriophage T4; Baseplate; Low resolution; X-ray crystallography

Mesh:

Substances:

Year:  2014        PMID: 24998893      PMCID: PMC4130566          DOI: 10.1016/j.jsb.2014.06.008

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  18 in total

1.  Combining electron microscopic with x-ray crystallographic structures.

Authors:  M G Rossmann; R Bernal; S V Pletnev
Journal:  J Struct Biol       Date:  2001-12       Impact factor: 2.867

2.  Three-dimensional structure of bacteriophage T4 baseplate.

Authors:  Victor A Kostyuchenko; Petr G Leiman; Paul R Chipman; Shuji Kanamaru; Mark J van Raaij; Fumio Arisaka; Vadim V Mesyanzhinov; Michael G Rossmann
Journal:  Nat Struct Biol       Date:  2003-08-17

3.  Three-dimensional rearrangement of proteins in the tail of bacteriophage T4 on infection of its host.

Authors:  Petr G Leiman; Paul R Chipman; Victor A Kostyuchenko; Vadim V Mesyanzhinov; Michael G Rossmann
Journal:  Cell       Date:  2004-08-20       Impact factor: 41.582

4.  Evolution of bacteriophage tails: Structure of T4 gene product 10.

Authors:  Petr G Leiman; Mikhail M Shneider; Vadim V Mesyanzhinov; Michael G Rossmann
Journal:  J Mol Biol       Date:  2006-03-09       Impact factor: 5.469

5.  The structure of gene product 6 of bacteriophage T4, the hinge-pin of the baseplate.

Authors:  Anastasia A Aksyuk; Petr G Leiman; Mikhail M Shneider; Vadim V Mesyanzhinov; Michael G Rossmann
Journal:  Structure       Date:  2009-06-10       Impact factor: 5.006

6.  Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers.

Authors:  Johan Hattne; Nathaniel Echols; Rosalie Tran; Jan Kern; Richard J Gildea; Aaron S Brewster; Roberto Alonso-Mori; Carina Glöckner; Julia Hellmich; Hartawan Laksmono; Raymond G Sierra; Benedikt Lassalle-Kaiser; Alyssa Lampe; Guangye Han; Sheraz Gul; Dörte DiFiore; Despina Milathianaki; Alan R Fry; Alan Miahnahri; William E White; Donald W Schafer; M Marvin Seibert; Jason E Koglin; Dimosthenis Sokaras; Tsu-Chien Weng; Jonas Sellberg; Matthew J Latimer; Pieter Glatzel; Petrus H Zwart; Ralf W Grosse-Kunstleve; Michael J Bogan; Marc Messerschmidt; Garth J Williams; Sébastien Boutet; Johannes Messinger; Athina Zouni; Junko Yano; Uwe Bergmann; Vittal K Yachandra; Paul D Adams; Nicholas K Sauter
Journal:  Nat Methods       Date:  2014-03-16       Impact factor: 28.547

7.  Genetic control of bacteriophage T4 baseplate morphogenesis. III. Formation of the central plug and overall assembly pathway.

Authors:  Y Kikuchi; J King
Journal:  J Mol Biol       Date:  1975-12-25       Impact factor: 5.469

8.  Molecular reorganization in the hexagon to star transition of the baseplate of bacteriophage T4.

Authors:  R A Crowther; E V Lenk; Y Kikuchi; J King
Journal:  J Mol Biol       Date:  1977-11-05       Impact factor: 5.469

9.  The baseplate wedges of bacteriophage T4 spontaneously assemble into hubless baseplate-like structure in vitro.

Authors:  Moh Lan Yap; Kazuhiro Mio; Petr G Leiman; Shuji Kanamaru; Fumio Arisaka
Journal:  J Mol Biol       Date:  2009-11-05       Impact factor: 5.469

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  4 in total

Review 1.  Molecular assembly and structure of the bacteriophage T4 tail.

Authors:  Fumio Arisaka; Moh Lan Yap; Shuji Kanamaru; Michael G Rossmann
Journal:  Biophys Rev       Date:  2016-11-05

2.  Role of bacteriophage T4 baseplate in regulating assembly and infection.

Authors:  Moh Lan Yap; Thomas Klose; Fumio Arisaka; Jeffrey A Speir; David Veesler; Andrei Fokine; Michael G Rossmann
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-29       Impact factor: 11.205

3.  Foreword to 'Multiscale structural biology: biophysical principles and mechanisms underlying the action of bio-nanomachines', a special issue in Honour of Fumio Arisaka's 70th birthday.

Authors:  Damien Hall; Junichi Takagi; Haruki Nakamura
Journal:  Biophys Rev       Date:  2018-03-02

Review 4.  My happy years of collaboration with Fumio Arisaka.

Authors:  Michael G Rossmann
Journal:  Biophys Rev       Date:  2017-12-12
  4 in total

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