Literature DB >> 24997361

Folding membrane proteins in vitro: a table and some comments.

Jean-Luc Popot1.   

Abstract

Thirty-three years have elapsed since the first membrane protein (MP) was brought back in vitro to its native state starting from the completely unfolded polypeptide. Folding MPs is as useful from a practical point of view as it is thought-provoking from a theoretical one. Yet, this activity is considered as a high-risk, time-consuming endeavor, full of pitfalls, its path littered with the broken careers of graduate students sacrificed on the altar of a long shot that never paid off. In fact, a surprisingly high number of MPs have actually been folded or refolded in vitro. Analysis of the literature indicates (i) that the endeavor is not as desperate as it may seem, (ii) that techniques are diversifying and improving, and (iii) that many MPs do not need the cellular biosynthetic apparatus, nor even a membrane environment, to reach a functional 3D structure. A compilation, hopefully close to complete, is presented of MPs that have been (re)folded in vitro to-date, with the conditions of their synthesis, the denaturant(s) used, if any, and the (re)folding conditions, along with a few comments. The hope is that this analysis will encourage membrane protein biochemists to consider producing their target proteins in this way, help them decide about an experimental course, and stimulate the reflection about which environments favor membrane protein folding and why.
Copyright © 2014 Elsevier Inc. All rights reserved.

Keywords:  Biochemistry; Biophysics; Folding; Membrane proteins; Surfactants

Mesh:

Substances:

Year:  2014        PMID: 24997361     DOI: 10.1016/j.abb.2014.06.029

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  12 in total

1.  Chemical synthesis of membrane proteins by the removable backbone modification method.

Authors:  Shan Tang; Chao Zuo; Dong-Liang Huang; Xiao-Ying Cai; Long-Hua Zhang; Chang-Lin Tian; Ji-Shen Zheng; Lei Liu
Journal:  Nat Protoc       Date:  2017-11-16       Impact factor: 13.491

2.  Cooperative folding of a polytopic α-helical membrane protein involves a compact N-terminal nucleus and nonnative loops.

Authors:  Wojciech Paslawski; Ove K Lillelund; Julie Veje Kristensen; Nicholas P Schafer; Rosanna P Baker; Sinisa Urban; Daniel E Otzen
Journal:  Proc Natl Acad Sci U S A       Date:  2015-06-08       Impact factor: 11.205

Review 3.  Transmembrane β-barrels: Evolution, folding and energetics.

Authors:  Deepti Chaturvedi; Radhakrishnan Mahalakshmi
Journal:  Biochim Biophys Acta Biomembr       Date:  2017-09-22       Impact factor: 3.747

4.  Folding and Misfolding of Human Membrane Proteins in Health and Disease: From Single Molecules to Cellular Proteostasis.

Authors:  Justin T Marinko; Hui Huang; Wesley D Penn; John A Capra; Jonathan P Schlebach; Charles R Sanders
Journal:  Chem Rev       Date:  2019-01-04       Impact factor: 60.622

Review 5.  Amphipols for each season.

Authors:  Manuela Zoonens; Jean-Luc Popot
Journal:  J Membr Biol       Date:  2014-06-27       Impact factor: 1.843

6.  Combining in Vitro Folding with Cell Free Protein Synthesis for Membrane Protein Expression.

Authors:  Paul J Focke; Christopher Hein; Beate Hoffmann; Kimberly Matulef; Frank Bernhard; Volker Dötsch; Francis I Valiyaveetil
Journal:  Biochemistry       Date:  2016-07-21       Impact factor: 3.162

7.  De novo design of transmembrane β barrels.

Authors:  Paul White; Binyong Liang; Anastassia A Vorobieva; Jim E Horne; Asim K Bera; Cameron M Chow; Stacey Gerben; Sinduja Marx; Alex Kang; Alyssa Q Stiving; Sophie R Harvey; Dagan C Marx; G Nasir Khan; Karen G Fleming; Vicki H Wysocki; David J Brockwell; Lukas K Tamm; Sheena E Radford; David Baker
Journal:  Science       Date:  2021-02-19       Impact factor: 47.728

8.  High-Yield Preparation of Outer Membrane Protein Efflux Pumps by in Vitro Refolding is Concentration Dependent.

Authors:  S Jimmy Budiardjo; Ayotunde Paul Ikujuni; Emre Firlar; Andrés Cordova; Jason T Kaelber; Joanna S G Slusky
Journal:  J Membr Biol       Date:  2021-01-19       Impact factor: 2.426

9.  Folding of newly translated membrane protein CCR5 is assisted by the chaperonin GroEL-GroES.

Authors:  Haixia Chi; Xiaoqiang Wang; Jiqiang Li; Hao Ren; Fang Huang
Journal:  Sci Rep       Date:  2015-11-20       Impact factor: 4.379

Review 10.  Outer membrane protein folding from an energy landscape perspective.

Authors:  Bob Schiffrin; David J Brockwell; Sheena E Radford
Journal:  BMC Biol       Date:  2017-12-21       Impact factor: 7.431

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