Literature DB >> 2499045

Crystal versus solution structures of enzymes: NMR spectroscopy of a crystalline serine protease.

S O Smith1, S Farr-Jones, R G Griffin, W W Bachovchin.   

Abstract

The hydrogen-bonding status of His57 in the catalytic triad (Asp-His-Ser) of serine protease has important mechanistic implications for this class of enzymes. Recent nitrogen-15 nuclear magnetic resonance (NMR) studies of alpha-lytic protease find His57 and Ser195 to be strongly hydrogen-bonded, a result that conflicts with the corresponding crystallographic studies, thereby suggesting that the crystal and solution structures may differ. This discrepancy is addressed and resolved in a nitrogen-15 NMR study of the enzyme in the crystalline state. The results show that the His-Ser and Asp-His interactions are identical in crystals and solutions, but that in crystals His57 titrates with a pKa of 7.9, nearly one pKa unit higher than in solution. This elevated pKa accounts for the absence of the His-Ser hydrogen bond in previous x-ray studies.

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Year:  1989        PMID: 2499045     DOI: 10.1126/science.2499045

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  11 in total

1.  Histidines, heart of the hydrogen ion channel from influenza A virus: toward an understanding of conductance and proton selectivity.

Authors:  Jun Hu; Riqiang Fu; Katsuyuki Nishimura; Li Zhang; Huan-Xiang Zhou; David D Busath; Viksita Vijayvergiya; Timothy A Cross
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-21       Impact factor: 11.205

2.  A new native EcHsp31 structure suggests a key role of structural flexibility for chaperone function.

Authors:  Paulene M Quigley; Konstantin Korotkov; François Baneyx; Wim G J Hol
Journal:  Protein Sci       Date:  2004-01       Impact factor: 6.725

3.  Solid-state NMR and density functional theory studies of ionization states of thiamin.

Authors:  Sivakumar Paramasivam; Anand Balakrishnan; Olga Dmitrenko; Amy Godert; Tadhg P Begley; Frank Jordan; Tatyana Polenova
Journal:  J Phys Chem B       Date:  2010-12-22       Impact factor: 2.991

4.  Practical considerations over spectral quality in solid state NMR spectroscopy of soluble proteins.

Authors:  Marco Fragai; Claudio Luchinat; Giacomo Parigi; Enrico Ravera
Journal:  J Biomol NMR       Date:  2013-08-30       Impact factor: 2.835

Review 5.  Expression of virus-encoded proteinases: functional and structural similarities with cellular enzymes.

Authors:  W G Dougherty; B L Semler
Journal:  Microbiol Rev       Date:  1993-12

6.  Crystal versus solution structure of enzymes: NMR spectroscopy of a peptide boronic acid-serine protease complex in the crystalline state.

Authors:  S Farr-Jones; S O Smith; C A Kettner; R G Griffin; W W Bachovchin
Journal:  Proc Natl Acad Sci U S A       Date:  1989-09       Impact factor: 11.205

7.  The tautomeric state of histidines in myoglobin.

Authors:  S Bhattacharya; S F Sukits; K L MacLaughlin; J T Lecomte
Journal:  Biophys J       Date:  1997-12       Impact factor: 4.033

8.  Structure and dynamics of photosynthetic membrane-bound proteins in Rhodobacter Sphaeroides, studied with solid-state NMR spectroscopy.

Authors:  J Kikuchi; M P Williamson; K Shimada; T Asakura
Journal:  Photosynth Res       Date:  2000       Impact factor: 3.573

9.  Solid-state nuclear magnetic resonance studies delineate the role of the protein in activation of both aromatic rings of thiamin.

Authors:  Anand Balakrishnan; Sivakumar Paramasivam; Sumit Chakraborty; Tatyana Polenova; Frank Jordan
Journal:  J Am Chem Soc       Date:  2011-12-09       Impact factor: 15.419

10.  Specific Inter-residue Interactions as Determinants of Human Monoacylglycerol Lipase Catalytic Competency: A ROLE FOR GLOBAL CONFORMATIONAL CHANGES.

Authors:  Sergiy Tyukhtenko; Ioannis Karageorgos; Girija Rajarshi; Nikolai Zvonok; Spiro Pavlopoulos; David R Janero; Alexandros Makriyannis
Journal:  J Biol Chem       Date:  2015-11-10       Impact factor: 5.157

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