| Literature DB >> 24987838 |
Glen J Weiss1, Balaji Ganeshan2, Kenneth A Miles2, David H Campbell3, Philip Y Cheung4, Samuel Frank5, Ronald L Korn6.
Abstract
BACKGROUND: Non-invasive characterization of a tumor's molecular features could enhance treatment management. Quantitative computed tomography (CT) based texture analysis (QTA) has been used to derive tumor heterogeneity information, and the appearance of the tumors has been shown to relate to patient outcome in non-small cell lung cancer (NSCLC) and other cancers. In this study, we examined the potential of tumoral QTA to differentiate K-ras mutant from pan-wildtype tumors and its prognostic potential using baseline pre-treatment non-contrast CT imaging in NSCLC.Entities:
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Year: 2014 PMID: 24987838 PMCID: PMC4079229 DOI: 10.1371/journal.pone.0100244
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
List of Genes Assessed.
| Gene Name |
| AKT1 |
| ALK |
| BRAF |
| DDR2 |
| EGFR |
| EPHA3 |
| EPHA5 |
| ERBB2 |
| FGFR4 |
| JAK2 |
| KRAS |
| MAP2K1 |
| STK11 |
| MET |
| NOTCH1 |
| NRAS |
| NRF2 |
| NTRK1 |
| NTRK2 |
| NTRK3 |
| PIK3CA |
| PTCH1 |
| PTEN |
| PTPN11 |
| PTPRD |
| TP53 |
Dataset Clinical features.
| Case | Age (Yrs) | Gender (M/F) | Initial Stage | Histology (Adeno, Squamous, Other) | Smoker? (Yes, No, Unknown) | Adjuvant Therapy (No, Yes, specific if known, Unknown) | Relapse (Yes, No, Unknown) | Brain Metastasis (Yes, No) | Vital Status (Alive, Deceased) | DFS (Mos) | OS (Mos) |
| K-ras1 | 65.2 | M | IA | A | Y | N | N | N | A | 61.57 | 61.57 |
| K-ras2 | 66.2 | M | IA | S | Y | N | N | N | D | 27.30 | 27.30 |
| K-ras3 | 70.6 | M | IA | A | Y | N | Y | Y | D | 17.90 | 59.60 |
| K-ras4 | 65.0 | F | IA | A | Y | N | N | N | A | 39.73 | 39.73 |
| K-ras5 | 71.5 | M | IA | A | Y | N | N | N | A | 47.27 | 47.27 |
| K-ras6 | 68.9 | F | IA | S | Y | N | N | N | A | 66.70 | 66.70 |
| K-ras7 | 53.8 | F | IB | A | Y | Y | Y | Y | A | 9.60 | 43.20 |
| K-ras8 | 76.2 | M | IB | A | Y | N | Y | N | D | 30.13 | 30.73 |
| K-ras9 | 62.2 | F | IB | A | Y | N | N | N | A | 87.03 | 87.03 |
| K-ras10 | 64.0 | F | IB | O | Y | N | N | N | D | 51.17 | 51.17 |
| K-ras11 | 45.1 | F | IIB | O | Y | U | N | N | D | 93.17 | 93.17 |
| K-ras12 | 74.2 | F | IB | A | Y | N | Y | N | D | 12.50 | 19.83 |
| K-ras13 | 79.7 | M | IB | A | Y | N | Y | N | D | 31.63 | 40.40 |
| K-ras14 | 61.5 | M | IA | A | Y | N | N | N | A | 101.00 | 101.00 |
| K-ras15 | 61.2 | M | IB | O | Y | Y | N | N | A | 78.10 | 78.10 |
| K-ras16 | 69.9 | F | IB | A | Y | N | Y | Y | D | 34.37 | 89.43 |
| K-ras17 | 65.6 | F | IB | A | Y | N | N | N | A | 79.13 | 79.13 |
| K-ras18 | 71.3 | M | IB | A | Y | U | N | N | A | 73.73 | 73.73 |
| K-ras19 | 49.7 | F | IB | A | Y | U | N | N | A | 66.13 | 66.13 |
| K-ras20 | 76.6 | M | IB | A | Y | U | U | U | D | U | 12.63 |
| K-ras21 | 72.6 | F | IIA | A | Y | Y, CIS/VIN | Y | N | A | 6.97 | 59.13 |
| K-ras22 | 82.0 | M | IIA | A | Y | N | Y | N | D | 8.20 | 15.97 |
| K-ras23 | 67.3 | M | IA | A | Y | U | U | N | D | U | 80.87 |
| K-ras24 | 53.9 | M | IB | A | Y | N | N | N | A | 108.43 | 108.43 |
| K-ras25 | 63.6 | M | IB | S | Y | N | N | N | A | 129.57 | 129.57 |
| K-ras26 | 72.2 | M | IIB | S | Y | N | Y | N | D | 7.47 | 12.17 |
| K-ras27 | 74.9 | M | IIA | A | Y | Y | Y | Y | D | 12.37 | 37.83 |
| Pan-wildtype1 | 59.8 | F | IA | A | Y | N | N | N | A | 59.00 | 59.00 |
| Pan-wildtype2 | 85.1 | M | IA | A | N | N | Y | N | D | 51.50 | 63.10 |
| Pan-wildtype3 | 82.9 | M | IA | S | Y | N | Y | N | A | 58.00 | 96.73 |
| Pan-wildtype4 | 82.5 | F | IA | A | Y | N | N | N | A | 44.50 | 44.50 |
| Pan-wildtype5 | 82.2 | F | IB | A | Y | N | N | N | A | 2.63 | 2.63 |
| Pan-wildtype6 | 50.1 | F | IA | A | U | N | Y | Y | A | 55.43 | 79.07 |
| Pan-wildtype7 | 76.2 | M | IA | S | Y | N | N | N | A | 28.27 | 56.50 |
| Pan-wildtype8 | 71.1 | F | IB | A | Y | N | N | N | A | 44.97 | 44.97 |
| Pan-wildtype9 | 65.5 | M | IA | S | Y | N | N | N | D | 29.13 | 29.13 |
| Pan-wildtype10 | 68.3 | M | IB | S | Y | N | N | N | A | 77.13 | 77.13 |
| Pan-wildtype11 | 77.1 | F | IB | A | Y | N | Y | N | D | 10.03 | 25.27 |
| Pan-wildtype12 | 46.0 | F | IB | A | Y | U | N | N | A | 76.47 | 76.47 |
| Pan-wildtype13 | 72.3 | M | IIA | S | Y | N | N | N | A | 96.33 | 96.33 |
| Pan-wildtype14 | 72.8 | M | IIA | A | Y | Y, CIS/VIN | Y | N | D | 22.80 | 29.83 |
| Pan-wildtype15 | 66.1 | F | IIB | A | Y | U | N | N | A | 77.43 | 77.43 |
| Pan-wildtype16 | 81.1 | M | IIA | A | Y | U | Y | N | D | 61.20 | 61.63 |
| Pan-wildtype17 | 78.1 | M | IA | O | Y | N | N | N | D | 23.03 | 23.03 |
| Pan-wildtype18 | 74.9 | M | IB | A | Y | N | Y | N | D | 6.73 | 20.90 |
| Pan-wildtype19 | 70.2 | M | IB | A | Y | N | U | U | D | U | 71.07 |
| Pan-wildtype20 | 73.3 | M | IIB | O | Y | Y, CIS/ETOP | Y | N | D | 23.43 | 27.73 |
| Pan-wildtype21 | 65.0 | M | IIB | S | Y | U | N | N | A | 50.00 | 50.00 |
Figure 1Box plot of pan-wildtype vs. K-ras mutation.
A) (Top Panel): Positive skewness with fine-texture significantly differentiates K-ras mutation from pan-wildtype (p = 0.031). B) (Bottom Panel): Lower kurtosis with coarse-texture significantly differentiates K-ras mutation from pan-wildtype (p = 0.009).
Figure 2Decision-tree for identification of KRAS mutations using QTA parameters.
M-Numbers of mutants; WT-number of pan-wildtype; SD-standard deviation; ssf-spatial scale factor.
Figure 3Overall survival curves based on QTA.
A) (Left Panel): Without filtration, higher skewness (green line, median OS 30.7 months) vs. lower skewness (blue line, median OS 89.4 months) was associated with inferior OS (p = 0.012). B) (Right Panel): Without filtration, lower kurtosis (green line, median OS 61.6 months) vs. higher kurtosis (blue line, median OS 93.2 months) was associated with inferior OS (p = 0.012).
Figure 4Disease free survival curves based on QTA.
Lower kurtosis with coarse-texture (green line, median DFS 59.6 months) had inferior OS vs. higher kurtosis (blue line, median DFS 93.2 months)(p = 0.048).