Literature DB >> 24985134

Dynamics of self-threading ring polymers in a gel.

Davide Michieletto1, Davide Marenduzzo, Enzo Orlandini, Gareth P Alexander, Matthew S Turner.   

Abstract

We study the dynamics of ring polymers confined to diffuse in a background gel at low concentrations. We do this in order to probe the inter-play between topology and dynamics in ring polymers. We develop an algorithm that takes into account the possibility that the rings hinder their own motion by passing through themselves, i.e. "self-threading". Our results suggest that the number of self-threadings scales extensively with the length of the rings and that this is substantially independent of the details of the model. The slowing down of the rings' dynamics is found to be related to the fraction of segments that can contribute to the motion. Our results give a novel perspective on the motion of ring polymers in a gel, for which a complete theory is still lacking, and may help us to understand the irreversible trapping of ring polymers in gel electrophoresis experiments.

Entities:  

Year:  2014        PMID: 24985134     DOI: 10.1039/c4sm00619d

Source DB:  PubMed          Journal:  Soft Matter        ISSN: 1744-683X            Impact factor:   3.679


  4 in total

1.  Topological patterns in two-dimensional gel electrophoresis of DNA knots.

Authors:  Davide Michieletto; Davide Marenduzzo; Enzo Orlandini
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-08       Impact factor: 11.205

2.  A topologically driven glass in ring polymers.

Authors:  Davide Michieletto; Matthew S Turner
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-26       Impact factor: 11.205

3.  Topological tuning of DNA mobility in entangled solutions of supercoiled plasmids.

Authors:  Jan Smrek; Jonathan Garamella; Rae Robertson-Anderson; Davide Michieletto
Journal:  Sci Adv       Date:  2021-05-12       Impact factor: 14.136

4.  Efficient compressed database of equilibrated configurations of ring-linear polymer blends for MD simulations.

Authors:  Katsumi Hagita; Takahiro Murashima; Masao Ogino; Manabu Omiya; Kenji Ono; Tetsuo Deguchi; Hiroshi Jinnai; Toshihiro Kawakatsu
Journal:  Sci Data       Date:  2022-02-08       Impact factor: 6.444

  4 in total

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