Literature DB >> 24978641

Melanoma epigenetics: novel mechanisms, markers, and medicines.

Jonathan J Lee1, George F Murphy1, Christine G Lian1.   

Abstract

The incidence and mortality rates of cutaneous melanoma continue to increase worldwide, despite the deployment of targeted therapies. Recently, there has been rapid growth and development in our understanding of epigenetic mechanisms and their role in cancer pathobiology. Epigenetics--defined as the processes resulting in heritable changes in gene expression beyond those caused by alterations in the DNA sequence--likely contain the information that encodes for such phenotypic variation between individuals with identical genotypes. By altering the structure of chromatin through covalent modification of DNA bases or histone proteins, or by regulating mRNA translation through non-coding RNAs, the epigenome ultimately determines which genes are expressed and which are kept silent. While our understanding of epigenetic mechanisms is growing at a rapid pace, the field of melanoma epigenomics still remains in its infancy. In this Pathology in Focus, we will briefly review the basics of epigenetics to contextualize and critically examine the existing literature using melanoma as a cancer paradigm. Our understanding of how dysregulated DNA methylation and DNA demethylation/hydroxymethylation, histone modification, and non-coding RNAs affect cancer pathogenesis and melanoma virulence, in particular, provides us with an ever-expanding repertoire of potential diagnostic biomarkers, therapeutic targets, and novel pathogenic mechanisms. The evidence reviewed herein indicates the critical role of epigenetic mechanisms in melanoma pathobiology and provides evidence for future targets in the development of next-generation biomarkers and therapeutics.

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Year:  2014        PMID: 24978641      PMCID: PMC4479581          DOI: 10.1038/labinvest.2014.87

Source DB:  PubMed          Journal:  Lab Invest        ISSN: 0023-6837            Impact factor:   5.662


  176 in total

Review 1.  Emerging connections between DNA methylation and histone acetylation.

Authors:  J R Dobosy; E U Selker
Journal:  Cell Mol Life Sci       Date:  2001-05       Impact factor: 9.261

Review 2.  The history of cancer epigenetics.

Authors:  Andrew P Feinberg; Benjamin Tycko
Journal:  Nat Rev Cancer       Date:  2004-02       Impact factor: 60.716

Review 3.  Epigenetic regulation of cellular memory by the Polycomb and Trithorax group proteins.

Authors:  Leonie Ringrose; Renato Paro
Journal:  Annu Rev Genet       Date:  2004       Impact factor: 16.830

4.  Downregulation of miRNA-200c links breast cancer stem cells with normal stem cells.

Authors:  Yohei Shimono; Maider Zabala; Robert W Cho; Neethan Lobo; Piero Dalerba; Dalong Qian; Maximilian Diehn; Huiping Liu; Sarita P Panula; Eric Chiao; Frederick M Dirbas; George Somlo; Renee A Reijo Pera; Kaiqin Lao; Michael F Clarke
Journal:  Cell       Date:  2009-08-07       Impact factor: 41.582

5.  A novel oncogenic role for the miRNA-506-514 cluster in initiating melanocyte transformation and promoting melanoma growth.

Authors:  K L Streicher; W Zhu; K P Lehmann; R W Georgantas; C A Morehouse; P Brohawn; R A Carrasco; Z Xiao; D A Tice; B W Higgs; L Richman; B Jallal; K Ranade; Y Yao
Journal:  Oncogene       Date:  2011-08-22       Impact factor: 9.867

6.  Loss of 5-hydroxymethylcytosine and ten-eleven translocation 2 protein expression in malignant melanoma.

Authors:  Thilo Gambichler; Michael Sand; Marina Skrygan
Journal:  Melanoma Res       Date:  2013-06       Impact factor: 3.599

7.  Identification of cells initiating human melanomas.

Authors:  Tobias Schatton; George F Murphy; Natasha Y Frank; Kazuhiro Yamaura; Ana Maria Waaga-Gasser; Martin Gasser; Qian Zhan; Stefan Jordan; Lyn M Duncan; Carsten Weishaupt; Robert C Fuhlbrigge; Thomas S Kupper; Mohamed H Sayegh; Markus H Frank
Journal:  Nature       Date:  2008-01-17       Impact factor: 49.962

8.  Significant impact of promoter hypermethylation and the 540 C>T polymorphism of CDKN2A in cutaneous melanoma of the vertical growth phase.

Authors:  Oddbjørn Straume; Johanna Smeds; Rajiv Kumar; Kari Hemminki; Lars Andreas Akslen
Journal:  Am J Pathol       Date:  2002-07       Impact factor: 4.307

9.  Functional analysis of the transcription repressor PLU-1/JARID1B.

Authors:  Angelo G Scibetta; Samantha Santangelo; Julia Coleman; Debbie Hall; Tracy Chaplin; John Copier; Steve Catchpole; Joy Burchell; Joyce Taylor-Papadimitriou
Journal:  Mol Cell Biol       Date:  2007-08-20       Impact factor: 4.272

10.  Safety and efficacy of decitabine in combination with temozolomide in metastatic melanoma: a phase I/II study and pharmacokinetic analysis.

Authors:  H A Tawbi; J H Beumer; A A Tarhini; S Moschos; S C Buch; M J Egorin; Y Lin; S Christner; J M Kirkwood
Journal:  Ann Oncol       Date:  2012-11-21       Impact factor: 32.976

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  27 in total

1.  Histone Deacetylase Inhibition Sensitizes PD1 Blockade-Resistant B-cell Lymphomas.

Authors:  Xiaoguang Wang; Brittany C Waschke; Rachel A Woolaver; Zhangguo Chen; Gan Zhang; Anthony D Piscopio; Xuedong Liu; Jing H Wang
Journal:  Cancer Immunol Res       Date:  2019-06-24       Impact factor: 11.151

Review 2.  Epigenetic markers in melanoma.

Authors:  Weimin Guo; Ting Xu; Jonathan J Lee; George F Murphy; Christine G Lian
Journal:  Melanoma Manag       Date:  2015-11-24

Review 3.  Cancer metastasis - tricks of the trade.

Authors:  Rabia Zeeshan; Zeeshan Mutahir
Journal:  Bosn J Basic Med Sci       Date:  2017-08-20       Impact factor: 3.363

Review 4.  Epigenetic deregulations in chordoma.

Authors:  Xin Yu; Zheng Li
Journal:  Cell Prolif       Date:  2015-08-10       Impact factor: 6.831

5.  Diagnostic utility of 5-hydroxymethylcytosine immunohistochemistry in melanocytic proliferations.

Authors:  Nemanja Rodić; John Zampella; Reema Sharma; Kathleen H Burns; Janis M Taube
Journal:  J Cutan Pathol       Date:  2015-09-02       Impact factor: 1.587

6.  The RUNX1/IL-34/CSF-1R axis is an autocrinally regulated modulator of resistance to BRAF-V600E inhibition in melanoma.

Authors:  Orsi Giricz; Yongkai Mo; Kimberly B Dahlman; Xiomaris M Cotto-Rios; Chiara Vardabasso; Hoa Nguyen; Bernice Matusow; Matthias Bartenstein; Veronika Polishchuk; Douglas B Johnson; Tushar D Bhagat; Rafe Shellooe; Elizabeth Burton; James Tsai; Chao Zhang; Gaston Habets; John M Greally; Yiting Yu; Paraic A Kenny; Gregg B Fields; Kith Pradhan; E Richard Stanley; Emily Bernstein; Gideon Bollag; Evripidis Gavathiotis; Brian L West; Jeffrey A Sosman; Amit K Verma
Journal:  JCI Insight       Date:  2018-07-26

Review 7.  Emerging Biomarkers in Cutaneous Melanoma.

Authors:  Anna Eisenstein; Estela Chen Gonzalez; Rekha Raghunathan; Xixi Xu; Muzhou Wu; Emily O McLean; Jean McGee; Byungwoo Ryu; Rhoda M Alani
Journal:  Mol Diagn Ther       Date:  2018-04       Impact factor: 4.074

Review 8.  Histone Modifications, Modifiers and Readers in Melanoma Resistance to Targeted and Immune Therapy.

Authors:  Stuart J Gallagher; Jessamy C Tiffen; Peter Hersey
Journal:  Cancers (Basel)       Date:  2015-09-25       Impact factor: 6.639

9.  Sulforaphane and iberin are potent epigenetic modulators of histone acetylation and methylation in malignant melanoma.

Authors:  Melina Mitsiogianni; Dimitrios T Trafalis; Rodrigo Franco; Vasilis Zoumpourlis; Aglaia Pappa; Mihalis I Panayiotidis
Journal:  Eur J Nutr       Date:  2020-03-25       Impact factor: 5.614

10.  Targeted next-generation sequencing reveals high frequency of mutations in epigenetic regulators across treatment-naïve patient melanomas.

Authors:  Jonathan J Lee; Lynette M Sholl; Neal I Lindeman; Scott R Granter; Alvaro C Laga; Priyanka Shivdasani; Gary Chin; Jason J Luke; Patrick A Ott; F Stephen Hodi; Martin C Mihm; Jennifer Y Lin; Andrew E Werchniak; Harley A Haynes; Nancy Bailey; Robert Liu; George F Murphy; Christine G Lian
Journal:  Clin Epigenetics       Date:  2015-06-09       Impact factor: 6.551

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