| Literature DB >> 24977181 |
Sui-Lung Su1, Hsin-Yi Yang1, Chia-Chao Wu2, Herng-Sheng Lee3, Yuh-Feng Lin4, Chi-An Hsu1, Ching-Huang Lai1, Chin Lin5, Sen-Yeong Kao1, Kuo-Cheng Lu6.
Abstract
OBJECTIVE: In this study, we investigated whether RAAS gene single nucleotide polymorphisms (SNPs) and their interactions were associated with end-stage renal stage (ESRD). METHODOLOGY ANDEntities:
Mesh:
Substances:
Year: 2014 PMID: 24977181 PMCID: PMC4003748 DOI: 10.1155/2014/169798
Source DB: PubMed Journal: ScientificWorldJournal ISSN: 1537-744X
Characteristics of study subjects.
| Case | Control |
| |
|---|---|---|---|
| Male (%) | 301 (46.5%) | 266 (41.3%) | 0.059 |
| Age (years) | 64.4 ± 14.7 | 65.7 ± 13.6 | 0.100 |
| Body mass index (kg/m2) | 22.5 ± 3.9 | 24.7 ± 3.9 | <0.001 |
| Current or former smoker | 120 (18.5%) | 72 (11.2%) | <0.001 |
| Current or former drinker | 68 (10.5%) | 60 (9.3%) | 0.065 |
| Systolic blood pressure (mmHg) | 141.2 ± 34.8 | 126.4 ± 16 | <0.001 |
| Diastolic blood pressure (mmHg) | 75.3 ± 11.2 | 75.9 ± 11.1 | 0.322 |
| Fasting plasma glucose (mg/dL) | 153.6 ± 72.1 | 98.4 ± 23.5 | <0.001 |
| eGFR (mL/min/1.73 m2) | 5.7 ± 2.6 | 87.8 ± 14.8 | <0.001 |
| BUN (mg/dL) | 66.8 ± 19.3 | 15.6 ± 5.6 | <0.001 |
| Uric acid (mg/dL) | 7.2 ± 1.5 | 5.7 ± 1.3 | <0.001 |
| Serum creatinine (mg/dL) | 9.6 ± 2.6 | 0.8 ± 0.2 | <0.001 |
| Serum total cholesterol (mg/dL) | 165.3 ± 35.9 | 184.7 ± 34.4 | <0.001 |
| Serum triglyceride (mg/dL) | 157.4 ± 110.7 | 121.5 ± 98.4 | <0.001 |
Genotype distribution of the RAAS polymorphisms among ESRD patients and control.
| Genotypes | Case | Control | Crude OR (95% CI) |
| Adjusted OR (95% CI) |
|
|---|---|---|---|---|---|---|
| AGT M235T | ||||||
| CC | 466 | 438 | 1 | 1 | ||
| CT | 169 | 182 | 0.87 (0.68–1.12) | 0.280 | 0.78 (0.59–1.03) | 0.075 |
| TT | 12 | 24 | 0.47 (0.23–0.95) | 0.036 | 0.24 (0.09–0.65) | 0.005 |
| T allele | 193 | 230 | 0.81 (0.65–0.99) | 0.044 | 0.70 (0.55–0.89) | 0.003 |
| AGT T174M | ||||||
| CC | 508 | 519 | 1 | 1 | ||
| CT | 134 | 120 | 1.14 (0.87–1.5) | 0.348 | 1.11 (0.82–1.51) | 0.484 |
| TT | 5 | 5 | 1.02 (0.29–3.55) | 0.973 | 1.19 (0.33–4.25) | 0.786 |
| T allele | 144 | 130 | 1.12 (0.87–1.43) | 0.393 | 1.11 (0.84–1.46) | 0.467 |
| AGTR1 A1166C | ||||||
| AA | 591 | 589 | 1 | 1 | ||
| AC | 56 | 55 | 1.01 (0.69–1.5) | 0.941 | 1.07 (0.7–1.63) | 0.761 |
| C allele | 56 | 55 | 1.01 (0.69–1.48) | 0.943 | 1.06 (0.7–1.61) | 0.766 |
| AGTR1 C573T | ||||||
| CC | 336 | 350 | 1 | 1 | ||
| CT | 267 | 240 | 1.16 (0.92–1.46) | 0.209 | 1.23 (0.96–1.59) | 0.105 |
| TT | 44 | 54 | 0.85 (0.55–1.3) | 0.450 | 0.84 (0.52–1.35) | 0.478 |
| T allele | 355 | 348 | 1.02 (0.86–1.21) | 0.812 | 1.05 (0.87–1.27) | 0.633 |
| ACE I/D | ||||||
| II | 231 | 281 | 1 | 1 | ||
| ID | 330 | 297 | 1.35 (1.07–1.71) | 0.012 | 1.42 (1.09–1.84) | 0.009 |
| DD | 86 | 66 | 1.59 (1.1–2.28) | 0.013 | 1.61 (1.08–2.4) | 0.019 |
| D allele | 502 | 429 | 1.27 (1.08–1.49) | 0.004 | 1.29 (1.08–1.54) | 0.005 |
| ACE G2350A | ||||||
| GG | 233 | 274 | 1 | 1 | ||
| GA | 299 | 276 | 1.27 (1.00–1.62) | 0.047 | 1.35 (1.03–1.76) | 0.029 |
| AA | 115 | 94 | 1.44 (1.04–1.99) | 0.028 | 1.62 (1.14–2.31) | 0.008 |
| A allele | 529 | 464 | 1.23 (1.05–1.44) | 0.011 | 1.31 (1.1–1.56) | 0.003 |
| CYP11B2 C-344T | ||||||
| TT | 384 | 340 | 1 | 1 | ||
| TC | 205 | 256 | 0.71 (0.55–0.92) | 0.010 | 0.70 (0.54–0.91) | 0.007 |
| CC | 58 | 48 | 1.07 (0.69–1.67) | 0.761 | 1.07 (0.69–1.68) | 0.756 |
| C allele | 321 | 352 | 0.88 (0.74–1.05) | 0.144 | 0.87 (0.72–1.06) | 0.178 |
Data were expressed as n (%) and have been adjusted by gender, age, BMI, and smoking status.
AGT, AGTR1, ACE, and CYP11B2 gene polymorphisms with risk of different cause of ESRD.
| Diabetic nephropathy | Hypertensive nephropathy | Glomerulonephritis | Systemic nephropathy | Other&
| |
|---|---|---|---|---|---|
| AGT | |||||
| M235T | |||||
| CT/CC | 0.75 (0.52–1.09) | 1.07 (0.58–1.98) | 0.51 (0.31–0.85)* | 0.97 (0.5–1.89) | 1.08 (0.59–1.99) |
| TT/CC | 0.33 (0.09–1.14) | — | 0.18 (0.02–1.41) | — | 0.46 (0.06–3.55) |
| T174M | |||||
| CT/CC | 1.26 (0.84–1.88) | 1.10 (0.54–2.24) | 1.07 (0.66–1.75) | 0.79 (0.35–1.77) | 1.17 (0.58–2.36) |
| TT/CC | 0.94 (0.17–5.07) | — | 0.94 (0.10–8.55) | 2.58 (0.29–23.17) | 2.13 (0.23–19.54) |
| AGTR1 | |||||
| A1166C | |||||
| AC/AA | 0.79 (0.42–1.47) | 0.96 (0.37–2.51) | 1.49 (0.81–2.74) | 0.72 (0.22–2.43) | 1.59 (0.68–3.74) |
| CC/AA | — | — | — | — | — |
| C573T | |||||
| CT/CC | 1.30 (0.92–1.83) | 0.96 (0.54–1.70) | 1.32 (0.87–1.98) | 1.31 (0.69–2.49) | 1.00 (0.54–1.84) |
| TT/CC | 0.68 (0.33–1.39) | 0.76 (0.26–2.25) | 0.59 (0.24–1.46) | 1.62 (0.61–4.35) | 1.4 (0.55–3.58) |
| ACE | |||||
| ID | |||||
| ID/II | 1.89 (1.31–2.71)* | 1.16 (0.64–2.11) | 1.35 (0.89–2.05) | 0.83 (0.42–1.61) | 1.22 (0.66–2.26) |
| DD/II | 1.71 (0.97–3.00) | 2.21 (1.01–4.83)* | 1.03 (0.5–2.13) | 2.07 (0.93–4.64) | 1.99 (0.85–4.65) |
| G2350A | |||||
| GA/GG | 1.65 (1.14–2.40)* | 1.93 (1.02–3.63)* | 1.02 (0.66–1.56) | 1.92 (0.97–3.77) | 0.91 (0.49–1.68) |
| AA/GG | 2.04 (1.28–3.28)* | 2.41 (1.11–5.22)* | 1.13 (0.63–2.04) | 2.17 (0.9–5.25) | 1.12 (0.5–2.53) |
| CYP11B2 | |||||
| C-344T | |||||
| TC/TT | 0.75 (0.52–1.07) | 0.58 (0.32–1.04) | 0.73 (0.48–1.12) | 0.50 (0.25–0.99)* | 0.82 (0.44–1.55) |
| CC/TT | 1.11 (0.61–2.00) | 0.53 (0.16–1.78) | 0.75 (0.34–1.68) | 1.55 (0.62–3.85) | 2.26 (0.99–5.15) |
*P < 0.05, #adjusted for gender, age, BMI, and smoking status; &Others: for example, kidney stone, polycystic kidney disease, and so forth.
Best gene-gene interaction models identified by the MDR method.
| Locus no. | Best model | Testing Bal. Acc. (%) | CVC† |
|
|---|---|---|---|---|
| 1 | ACE I/D | 0.5179 | 6/10 | 0.6520 |
| 2 | ACE I/D, ACE G2350A | 0.5537 | 10/10 | 0.0280 |
| 3 | ACE I/D, ACE G2350A, CYP11B2 C-344T | 0.5608 | 9/10 | 0.0060 |
| 4 | AGTR1 C573T, ACE I/D, ACE G2350A, CYP11B2 C-344T | 0.5499 | 7/10 | 0.0560 |
| 5 | AGT M235T, AGTR1 C573T, ACE I/D, ACE G2350A, CYP11B2 C-344T | 0.5568 | 7/10 | 0.0150 |
| 6 | AGT M235T, AGT T174M, AGTR1 C573T, ACE I/D, ACE G2350A, CYP11B2 C-344T | 0.5290 | 6/10 | 0.4100 |
| 7 | AGT M235T, AGT T174M, AGTR1 A1166C, AGTR1 C573T, ACE I/D, ACE G2350A, CYP11B2 C-344T | 0.5227 | 10/10 | 0.5500 |
*Interactions were validated based on 1000 permutations; †CVC: cross-validation consistency.
Figure 1The distribution of cases (left bars) and controls (right bars) for each genotype combination from the three SNPs (ACE I/D, ACE G2350A, and CYP11B2 C-344T) identified in the overall best model by MDR analysis.
Figure 2Interaction map for ESRD risk. The values inside boxes indicate information gain (IG) of individual attribute or main effects, whereas values between nodes exemplify IG of pairwise combinations of attributes or interaction effects. A positive entropy (plotted in red or orange) indicates interaction while a negative (plotted in green) indicates redundancy.
Joint effect of ACE I/D and ACE G2350A from ESRD.
| Genotypes | Case | Control | Crude OR (95% CI) |
| Adjusted# OR (95% CI) |
|
|---|---|---|---|---|---|---|
| I/D | ||||||
| II | ||||||
| G2350A | ||||||
| GG | 154 | 149 | 1 | 1 | ||
| GA | 67 | 103 | 0.63 (0.43–0.92) | 0.017 | 0.68 (0.46–1.05) | 0.084 |
| AA | 12 | 22 | 0.53 (0.25–1.11) | 0.090 | 0.40 (0.16–1.00) | 0.050 |
| ID | ||||||
| G2350A | ||||||
| GG | 50 | 97 | 0.5 (0.33–0.75) | 0.001 | 0.52 (0.33–0.84) | 0.007 |
| GA | 221 | 151 | 1.42 (1.04–1.92) | 0.026 | 1.56 (1.09–2.22) | 0.015 |
| AA | 28 | 28 | 0.97 (0.55–1.71) | 0.910 | 1.13 (0.58–2.21) | 0.715 |
| DD | ||||||
| G2350A | ||||||
| GG | 27 | 35 | 0.75 (0.43–1.29) | 0.297 | 0.82 (0.43–1.54) | 0.536 |
| GA | 42 | 43 | 0.95 (0.58–1.53) | 0.818 | 1.11 (0.64–1.91) | 0.717 |
| AA | 46 | 16 | 2.78 (1.51–5.13) | 0.001 | 3.13 (1.60–6.13) | 0.001 |
#Adjusted for gender, age, BMI, and smoking status.