Literature DB >> 24965727

The complex domestication history of the common bean.

Brandon S Gaut1.   

Abstract

A new study reports the genome of common bean (Phaseolus vulgaris) and genome-wide resequencing data from both wild and domesticated accessions. These data confirm that common bean was domesticated at least twice, in Mesoamerica and South America, and also provide a framework to identify genes that contributed to the phenotypic changes associated with domestication.

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Year:  2014        PMID: 24965727     DOI: 10.1038/ng.3017

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  13 in total

1.  Comparative population genomics of maize domestication and improvement.

Authors:  Matthew B Hufford; Xun Xu; Joost van Heerwaarden; Tanja Pyhäjärvi; Jer-Ming Chia; Reed A Cartwright; Robert J Elshire; Jeffrey C Glaubitz; Kate E Guill; Shawn M Kaeppler; Jinsheng Lai; Peter L Morrell; Laura M Shannon; Chi Song; Nathan M Springer; Ruth A Swanson-Wagner; Peter Tiffin; Jun Wang; Gengyun Zhang; John Doebley; Michael D McMullen; Doreen Ware; Edward S Buckler; Shuang Yang; Jeffrey Ross-Ibarra
Journal:  Nat Genet       Date:  2012-06-03       Impact factor: 38.330

Review 2.  Fractionation mutagenesis and similar consequences of mechanisms removing dispensable or less-expressed DNA in plants.

Authors:  Michael Freeling; Margaret R Woodhouse; Shabarinath Subramaniam; Gina Turco; Damon Lisch; James C Schnable
Journal:  Curr Opin Plant Biol       Date:  2012-02-14       Impact factor: 7.834

3.  Demographic factors shaped diversity in the two gene pools of wild common bean Phaseolus vulgaris L.

Authors:  S Mamidi; M Rossi; S M Moghaddam; D Annam; R Lee; R Papa; P E McClean
Journal:  Heredity (Edinb)       Date:  2012-11-21       Impact factor: 3.821

4.  Current perspectives and the future of domestication studies.

Authors:  Greger Larson; Dolores R Piperno; Robin G Allaby; Michael D Purugganan; Leif Andersson; Manuel Arroyo-Kalin; Loukas Barton; Cynthia Climer Vigueira; Tim Denham; Keith Dobney; Andrew N Doust; Paul Gepts; M Thomas P Gilbert; Kristen J Gremillion; Leilani Lucas; Lewis Lukens; Fiona B Marshall; Kenneth M Olsen; J Chris Pires; Peter J Richerson; Rafael Rubio de Casas; Oris I Sanjur; Mark G Thomas; Dorian Q Fuller
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-22       Impact factor: 11.205

5.  The effects of artificial selection on the maize genome.

Authors:  Stephen I Wright; Irie Vroh Bi; Steve G Schroeder; Masanori Yamasaki; John F Doebley; Michael D McMullen; Brandon S Gaut
Journal:  Science       Date:  2005-05-27       Impact factor: 47.728

Review 6.  A bountiful harvest: genomic insights into crop domestication phenotypes.

Authors:  Kenneth M Olsen; Jonathan F Wendel
Journal:  Annu Rev Plant Biol       Date:  2013-02-28       Impact factor: 26.379

7.  Molecular analysis of the parallel domestication of the common bean (Phaseolus vulgaris) in Mesoamerica and the Andes.

Authors:  Elena Bitocchi; Elisa Bellucci; Alessandro Giardini; Domenico Rau; Monica Rodriguez; Eleonora Biagetti; Rodolfo Santilocchi; Pierluigi Spagnoletti Zeuli; Tania Gioia; Giuseppina Logozzo; Giovanna Attene; Laura Nanni; Roberto Papa
Journal:  New Phytol       Date:  2012-11-05       Impact factor: 10.151

8.  A genomic variation map provides insights into the genetic basis of cucumber domestication and diversity.

Authors:  Jianjian Qi; Xin Liu; Di Shen; Han Miao; Bingyan Xie; Xixiang Li; Peng Zeng; Shenhao Wang; Yi Shang; Xingfang Gu; Yongchen Du; Ying Li; Tao Lin; Jinhong Yuan; Xueyong Yang; Jinfeng Chen; Huiming Chen; Xingyao Xiong; Ke Huang; Zhangjun Fei; Linyong Mao; Li Tian; Thomas Städler; Susanne S Renner; Sophien Kamoun; William J Lucas; Zhonghua Zhang; Sanwen Huang
Journal:  Nat Genet       Date:  2013-10-20       Impact factor: 38.330

9.  Parallel domestication of the Shattering1 genes in cereals.

Authors:  Zhongwei Lin; Xianran Li; Laura M Shannon; Cheng-Ting Yeh; Ming L Wang; Guihua Bai; Zhao Peng; Jiarui Li; Harold N Trick; Thomas E Clemente; John Doebley; Patrick S Schnable; Mitchell R Tuinstra; Tesfaye T Tesso; Frank White; Jianming Yu
Journal:  Nat Genet       Date:  2012-05-13       Impact factor: 38.330

10.  A map of rice genome variation reveals the origin of cultivated rice.

Authors:  Xuehui Huang; Nori Kurata; Xinghua Wei; Zi-Xuan Wang; Ahong Wang; Qiang Zhao; Yan Zhao; Kunyan Liu; Hengyun Lu; Wenjun Li; Yunli Guo; Yiqi Lu; Congcong Zhou; Danlin Fan; Qijun Weng; Chuanrang Zhu; Tao Huang; Lei Zhang; Yongchun Wang; Lei Feng; Hiroyasu Furuumi; Takahiko Kubo; Toshie Miyabayashi; Xiaoping Yuan; Qun Xu; Guojun Dong; Qilin Zhan; Canyang Li; Asao Fujiyama; Atsushi Toyoda; Tingting Lu; Qi Feng; Qian Qian; Jiayang Li; Bin Han
Journal:  Nature       Date:  2012-10-03       Impact factor: 49.962

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  4 in total

1.  Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes.

Authors:  Anna Vlasova; Salvador Capella-Gutiérrez; Martha Rendón-Anaya; Miguel Hernández-Oñate; André E Minoche; Ionas Erb; Francisco Câmara; Pablo Prieto-Barja; André Corvelo; Walter Sanseverino; Gastón Westergaard; Juliane C Dohm; Georgios J Pappas; Soledad Saburido-Alvarez; Darek Kedra; Irene Gonzalez; Luca Cozzuto; Jessica Gómez-Garrido; María A Aguilar-Morón; Nuria Andreu; O Mario Aguilar; Jordi Garcia-Mas; Maik Zehnsdorf; Martín P Vázquez; Alfonso Delgado-Salinas; Luis Delaye; Ernesto Lowy; Alejandro Mentaberry; Rosana P Vianello-Brondani; José Luís García; Tyler Alioto; Federico Sánchez; Heinz Himmelbauer; Marta Santalla; Cedric Notredame; Toni Gabaldón; Alfredo Herrera-Estrella; Roderic Guigó
Journal:  Genome Biol       Date:  2016-02-25       Impact factor: 13.583

2.  Marker-Trait Association Analysis of Seed Traits in Accessions of Common Bean (Phaseolus vulgaris L.) in China.

Authors:  Lei Lei; Lanfen Wang; Shumin Wang; Jing Wu
Journal:  Front Genet       Date:  2020-06-30       Impact factor: 4.599

3.  The Common Bean V Gene Encodes Flavonoid 3'5' Hydroxylase: A Major Mutational Target for Flavonoid Diversity in Angiosperms.

Authors:  Phillip E McClean; Rian Lee; Kevin Howe; Caroline Osborne; Jane Grimwood; Shawn Levy; Amanda Peters Haugrud; Chris Plott; Melanie Robinson; Ryan M Skiba; Tabassum Tanha; Mariam Zamani; Theodore W Thannhauser; Raymond P Glahn; Jeremy Schmutz; Juan M Osorno; Phillip N Miklas
Journal:  Front Plant Sci       Date:  2022-03-31       Impact factor: 5.753

4.  Assessment of the Origin and Diversity of Croatian Common Bean Germplasm Using Phaseolin Type, SSR and SNP Markers and Morphological Traits.

Authors:  Monika Vidak; Zlatko Šatović; Zlatko Liber; Martina Grdiša; Jerko Gunjača; Andrzej Kilian; Klaudija Carović-Stanko
Journal:  Plants (Basel)       Date:  2021-03-30
  4 in total

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