Literature DB >> 24958301

Spherical tensor multipolar electrostatics and smooth particle mesh Ewald summation: a theoretical study.

François Zielinski1, Paul L A Popelier.   

Abstract

The point-charge approximation, typically used by classical molecular mechanics force-fields, can be overcome by a multipolar expansion. For decades multipole moments were only used in the context of the rigid body approximation but recently it has become possible to combine multipolar electrostatics with molecular flexibility. The program DL_MULTI, which is derived from DL_POLY_2, includes efficient multipolar Ewald functionality up to the hexadecapole moment but the code is restricted to rigid bodies. The incorporation of flexibility into DL_MULTI would cause too large an impact on its architecture whereas the package DL_POLY_4 offers a more attractive and sustainable route to handle multipolar electrostatics. This package inherently handles molecular flexibility, which warrants sufficiently transferable atoms or atoms that are "knowledgeable" about their chemical environment (as made possible by quantum chemical topology and machine learning). DL_MULTI uses the spherical multipole formalism, which is mathematically more involved than the Cartesian one but which is more compact. DL_POLY_4 uses the computationally efficient method of smooth particle mesh Ewald (SPME) summation, which has also been parallellized by others. Therefore, combining the strengths of DL_POLY_4 and DL_MULTI poses the challenge of merging SPME with multipolar electrostatics by spherical multipole. In an effort to recast as clearly as possible the principles behind DL_MULTI, its key equations have been reformulated by the more streamlined route involving the algebra of complex numbers, and some of these equations' peculiarities clarified. This article explores theoretically the repercussions of the merging of SPME with spherical multipole electrostatics (as implemented in DL_MULTI). Difficulties in design and implementation of possible future code are discussed.

Year:  2014        PMID: 24958301     DOI: 10.1007/s00894-014-2256-y

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  15 in total

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Authors:  Christopher J Fennell; J Daniel Gezelter
Journal:  J Chem Phys       Date:  2006-06-21       Impact factor: 3.488

2.  Notes on "Ewald summation of electrostatic multipole interactions up to quadrupolar level" [J. Chem. Phys. 119, 7471 (2003)].

Authors:  Teodoro Laino; Jürg Hutter
Journal:  J Chem Phys       Date:  2008-08-21       Impact factor: 3.488

3.  Accuracy and tractability of a kriging model of intramolecular polarizable multipolar electrostatics and its application to histidine.

Authors:  Shaun M Kandathil; Timothy L Fletcher; Yongna Yuan; Joshua Knowles; Paul L A Popelier
Journal:  J Comput Chem       Date:  2013-05-29       Impact factor: 3.376

4.  Some comments and corrections regarding the calculation of electrostatic potential derivatives using the Ewald summation technique.

Authors:  Joakim Stenhammar; Martin Trulsson; Per Linse
Journal:  J Chem Phys       Date:  2011-06-14       Impact factor: 3.488

Review 5.  New insights in atom-atom interactions for future drug design.

Authors:  Paul Popelier
Journal:  Curr Top Med Chem       Date:  2012       Impact factor: 3.295

6.  Properties and 3D Structure of Liquid Water:  A Perspective from a High-Rank Multipolar Electrostatic Potential.

Authors:  Steven Y Liem; Paul L A Popelier
Journal:  J Chem Theory Comput       Date:  2008-02       Impact factor: 6.006

7.  Aqueous imidazole solutions: a structural perspective from simulations with high-rank electrostatic multipole moments.

Authors:  Steven Y Liem; Majeed S Shaik; Paul L A Popelier
Journal:  J Phys Chem B       Date:  2011-09-09       Impact factor: 2.991

8.  Simulation of liquid imidazole using a high-rank quantum topological electrostatic potential.

Authors:  Majeed S Shaik; Steven Y Liem; Yongna Yuan; Paul L A Popelier
Journal:  Phys Chem Chem Phys       Date:  2010-10-21       Impact factor: 3.676

9.  Towards an accurate representation of electrostatics in classical force fields: efficient implementation of multipolar interactions in biomolecular simulations.

Authors:  Celeste Sagui; Lee G Pedersen; Thomas A Darden
Journal:  J Chem Phys       Date:  2004-01-01       Impact factor: 3.488

10.  Unified approach to multipolar polarisation and charge transfer for ions: microhydrated Na+.

Authors:  Matthew J L Mills; Glenn I Hawe; Christopher M Handley; Paul L A Popelier
Journal:  Phys Chem Chem Phys       Date:  2013-11-07       Impact factor: 3.676

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  1 in total

1.  Multipolar Ewald methods, 1: theory, accuracy, and performance.

Authors:  Timothy J Giese; Maria T Panteva; Haoyuan Chen; Darrin M York
Journal:  J Chem Theory Comput       Date:  2015-02-10       Impact factor: 6.006

  1 in total

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