Literature DB >> 24957674

Yeast X-chromosome-associated protein 5 (Xap5) functions with H2A.Z to suppress aberrant transcripts.

Shajahan Anver1, Assen Roguev2, Martin Zofall3, Nevan J Krogan2, Shiv I S Grewal3, Stacey L Harmer4.   

Abstract

Chromatin regulatory proteins affect diverse developmental and environmental response pathways via their influence on nuclear processes such as the regulation of gene expression. Through a genome-wide genetic screen, we implicate a novel protein called X-chromosome-associated protein 5 (Xap5) in chromatin regulation. We show that Xap5 is a chromatin-associated protein acting in a similar manner as the histone variant H2A.Z to suppress expression of antisense and repeat element transcripts throughout the fission yeast genome. Xap5 is highly conserved across eukaryotes, and a plant homolog rescues xap5 mutant yeast. We propose that Xap5 likely functions as a chromatin regulator in diverse organisms.
© 2014 The Authors.

Entities:  

Keywords:  aberrant transcripts; chromatin modification; long terminal repeats; transcriptional repression; transposable elements

Mesh:

Substances:

Year:  2014        PMID: 24957674      PMCID: PMC4197047          DOI: 10.15252/embr.201438902

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  32 in total

1.  Chromatin remodelling at promoters suppresses antisense transcription.

Authors:  Iestyn Whitehouse; Oliver J Rando; Jeff Delrow; Toshio Tsukiyama
Journal:  Nature       Date:  2007-12-13       Impact factor: 49.962

Review 2.  Histone variants and chromatin assembly in plant abiotic stress responses.

Authors:  Yan Zhu; Aiwu Dong; Wen-Hui Shen
Journal:  Biochim Biophys Acta       Date:  2013 Mar-Apr

3.  ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.

Authors:  Akihisa Matsuyama; Ritsuko Arai; Yoko Yashiroda; Atsuko Shirai; Ayako Kamata; Shigeko Sekido; Yumiko Kobayashi; Atsushi Hashimoto; Makiko Hamamoto; Yasushi Hiraoka; Sueharu Horinouchi; Minoru Yoshida
Journal:  Nat Biotechnol       Date:  2006-06-25       Impact factor: 54.908

4.  Comprehensive analysis of heterochromatin- and RNAi-mediated epigenetic control of the fission yeast genome.

Authors:  Hugh P Cam; Tomoyasu Sugiyama; Ee Sin Chen; Xi Chen; Peter C FitzGerald; Shiv I S Grewal
Journal:  Nat Genet       Date:  2005-06-24       Impact factor: 38.330

5.  Functional dissection of protein complexes involved in yeast chromosome biology using a genetic interaction map.

Authors:  Sean R Collins; Kyle M Miller; Nancy L Maas; Assen Roguev; Jeffrey Fillingham; Clement S Chu; Maya Schuldiner; Marinella Gebbia; Judith Recht; Michael Shales; Huiming Ding; Hong Xu; Junhong Han; Kristin Ingvarsdottir; Benjamin Cheng; Brenda Andrews; Charles Boone; Shelley L Berger; Phil Hieter; Zhiguo Zhang; Grant W Brown; C James Ingles; Andrew Emili; C David Allis; David P Toczyski; Jonathan S Weissman; Jack F Greenblatt; Nevan J Krogan
Journal:  Nature       Date:  2007-02-21       Impact factor: 49.962

6.  Differential expression of XAP5, a candidate disease gene.

Authors:  R Mazzarella; G Pengue; J Yoon; J Jones; D Schlessinger
Journal:  Genomics       Date:  1997-10-01       Impact factor: 5.736

Review 7.  Basic methods for fission yeast.

Authors:  Susan L Forsburg; Nicholas Rhind
Journal:  Yeast       Date:  2006-02       Impact factor: 3.239

8.  Global effects on gene expression in fission yeast by silencing and RNA interference machineries.

Authors:  Klavs R Hansen; Gavin Burns; Juan Mata; Thomas A Volpe; Robert A Martienssen; Jürg Bähler; Geneviève Thon
Journal:  Mol Cell Biol       Date:  2005-01       Impact factor: 4.272

9.  A strategy for extracting and analyzing large-scale quantitative epistatic interaction data.

Authors:  Sean R Collins; Maya Schuldiner; Nevan J Krogan; Jonathan S Weissman
Journal:  Genome Biol       Date:  2006       Impact factor: 13.583

10.  The systematic functional characterisation of Xq28 genes prioritises candidate disease genes.

Authors:  Anja Kolb-Kokocinski; Alexander Mehrle; Stephanie Bechtel; Jeremy C Simpson; Petra Kioschis; Stefan Wiemann; Ruth Wellenreuther; Annemarie Poustka
Journal:  BMC Genomics       Date:  2006-02-17       Impact factor: 3.969

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  6 in total

1.  New class of transcription factors controls flagellar assembly by recruiting RNA polymerase II in Chlamydomonas.

Authors:  Lili Li; Guangmei Tian; Hai Peng; Dan Meng; Liang Wang; Xiao Hu; Cheng Tian; Miao He; Junfei Zhou; Lihong Chen; Cheng Fu; Weixiong Zhang; Zhangfeng Hu
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-09       Impact factor: 11.205

2.  Natural genetic variation impacts expression levels of coding, non-coding, and antisense transcripts in fission yeast.

Authors:  Mathieu Clément-Ziza; Francesc X Marsellach; Sandra Codlin; Manos A Papadakis; Susanne Reinhardt; María Rodríguez-López; Stuart Martin; Samuel Marguerat; Alexander Schmidt; Eunhye Lee; Christopher T Workman; Jürg Bähler; Andreas Beyer
Journal:  Mol Syst Biol       Date:  2014-11-28       Impact factor: 11.429

3.  Interconnections Between RNA-Processing Pathways Revealed by a Sequencing-Based Genetic Screen for Pre-mRNA Splicing Mutants in Fission Yeast.

Authors:  Amy Larson; Benjamin Jung Fair; Jeffrey A Pleiss
Journal:  G3 (Bethesda)       Date:  2016-06-01       Impact factor: 3.154

4.  XAP5 CIRCADIAN TIMEKEEPER Positively Regulates RESISTANCE TO POWDERY MILDEW8.1-Mediated Immunity in Arabidopsis.

Authors:  Yong-Ju Xu; Yang Lei; Ran Li; Ling-Li Zhang; Zhi-Xue Zhao; Jing-Hao Zhao; Jing Fan; Yan Li; Hui Yang; Jing Shang; Shunyuan Xiao; Wen-Ming Wang
Journal:  Front Plant Sci       Date:  2017-11-30       Impact factor: 5.753

5.  Combinatorial CRISPR screen identifies fitness effects of gene paralogues.

Authors:  Marco Ranzani; Louise van der Weyden; Nicola A Thompson; Vivek Iyer; Victoria Offord; Alastair Droop; Fiona Behan; Emanuel Gonçalves; Anneliese Speak; Francesco Iorio; James Hewinson; Victoria Harle; Holly Robertson; Elizabeth Anderson; Beiyuan Fu; Fengtang Yang; Guido Zagnoli-Vieira; Phil Chapman; Martin Del Castillo Velasco-Herrera; Mathew J Garnett; Stephen P Jackson; David J Adams
Journal:  Nat Commun       Date:  2021-02-26       Impact factor: 14.919

6.  XAP5 CIRCADIAN TIMEKEEPER Affects Both DNA Damage Responses and Immune Signaling in Arabidopsis.

Authors:  Roderick W Kumimoto; Cory T Ellison; Tania Y Toruño; Aurélie Bak; Hongtao Zhang; Clare L Casteel; Gitta Coaker; Stacey L Harmer
Journal:  Front Plant Sci       Date:  2021-10-01       Impact factor: 5.753

  6 in total

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