Literature DB >> 24954543

Site-directed RNA editing with antagomir deaminases--a tool to study protein and RNA function.

Paul Vogel1, Thorsten Stafforst.   

Abstract

RNA-guided machineries perfectly satisfy the demand for rationally programmable tools that manipulate gene function inside the cell. Over the last ten years, various natural machineries have been harnessed, with RNA interference being among the most prominent examples. It is now time to tackle the engineering of novel RNA-guided tools not provided by nature. In this respect, we highlight RNA-guided site-directed RNA editing as a new concept for the manipulation of RNA and protein function. In contrast to currently available techniques, RNA editing allows for the introduction of selected point mutations into the transcriptome without the need for genomic manipulation. In particular, the approach described using chemically stabilized, antagomir-like guideRNAs may offer advantages over others, such as specificity and circumvention of immunogenicity. These new tools have significant potential for the advancement of both basic science and medicinal application, especially in the treatment of genetic diseases.
© 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  RNA; bioengineering; editing; genetic diseases; nucleic acid analogues

Mesh:

Substances:

Year:  2014        PMID: 24954543     DOI: 10.1002/cmdc.201402139

Source DB:  PubMed          Journal:  ChemMedChem        ISSN: 1860-7179            Impact factor:   3.466


  17 in total

1.  Abundant off-target edits from site-directed RNA editing can be reduced by nuclear localization of the editing enzyme.

Authors:  Isabel C Vallecillo-Viejo; Noa Liscovitch-Brauer; Maria Fernanda Montiel-Gonzalez; Eli Eisenberg; Joshua J C Rosenthal
Journal:  RNA Biol       Date:  2017-11-13       Impact factor: 4.652

2.  Site-directed RNA repair of endogenous Mecp2 RNA in neurons.

Authors:  John R Sinnamon; Susan Y Kim; Glen M Corson; Zhen Song; Hiroyuki Nakai; John P Adelman; Gail Mandel
Journal:  Proc Natl Acad Sci U S A       Date:  2017-10-16       Impact factor: 11.205

3.  Site-directed RNA editing by adenosine deaminase acting on RNA for correction of the genetic code in gene therapy.

Authors:  Md T A Azad; S Bhakta; T Tsukahara
Journal:  Gene Ther       Date:  2017-12-07       Impact factor: 5.250

Review 4.  Base editing: precision chemistry on the genome and transcriptome of living cells.

Authors:  Holly A Rees; David R Liu
Journal:  Nat Rev Genet       Date:  2018-12       Impact factor: 53.242

5.  Recognition of duplex RNA by the deaminase domain of the RNA editing enzyme ADAR2.

Authors:  Kelly J Phelps; Kiet Tran; Tristan Eifler; Anna I Erickson; Andrew J Fisher; Peter A Beal
Journal:  Nucleic Acids Res       Date:  2015-01-06       Impact factor: 16.971

6.  An efficient system for selectively altering genetic information within mRNAs.

Authors:  Maria Fernanda Montiel-González; Isabel C Vallecillo-Viejo; Joshua J C Rosenthal
Journal:  Nucleic Acids Res       Date:  2016-08-23       Impact factor: 16.971

Review 7.  The notorious R.N.A. in the spotlight - drug or target for the treatment of disease.

Authors:  Philipp Reautschnig; Paul Vogel; Thorsten Stafforst
Journal:  RNA Biol       Date:  2016-07-14       Impact factor: 4.652

8.  TRIBE: Hijacking an RNA-Editing Enzyme to Identify Cell-Specific Targets of RNA-Binding Proteins.

Authors:  Aoife C McMahon; Reazur Rahman; Hua Jin; James L Shen; Allegra Fieldsend; Weifei Luo; Michael Rosbash
Journal:  Cell       Date:  2016-03-31       Impact factor: 41.582

9.  Site-Directed RNA Editing in Vivo Can Be Triggered by the Light-Driven Assembly of an Artificial Riboprotein.

Authors:  Alfred Hanswillemenke; Tahsin Kuzdere; Paul Vogel; Gáspár Jékely; Thorsten Stafforst
Journal:  J Am Chem Soc       Date:  2015-12-10       Impact factor: 15.419

10.  Switching Protein Localization by Site-Directed RNA Editing under Control of Light.

Authors:  Paul Vogel; Alfred Hanswillemenke; Thorsten Stafforst
Journal:  ACS Synth Biol       Date:  2017-06-15       Impact factor: 5.110

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