Literature DB >> 24952180

Stable isotope labeling by amino acids in cell culture (SILAC) for quantitative proteomics.

Esthelle Hoedt1, Guoan Zhang, Thomas A Neubert.   

Abstract

Stable isotope labeling by amino acids in cell culture (SILAC) is a powerful approach for high-throughput quantitative proteomics. SILAC allows highly accurate protein quantitation through metabolic encoding of whole cell proteomes using stable isotope labeled amino acids. Since its introduction in 2002, SILAC has become increasingly popular. In this chapter we review the methodology and application of SILAC, with an emphasis on three research areas: dynamics of posttranslational modifications, protein-protein interactions, and protein turnover.

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Year:  2014        PMID: 24952180     DOI: 10.1007/978-3-319-06068-2_5

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  12 in total

1.  Probing the lithium-response pathway in hiPSCs implicates the phosphoregulatory set-point for a cytoskeletal modulator in bipolar pathogenesis.

Authors:  Brian T D Tobe; Andrew M Crain; Alicia M Winquist; Barbara Calabrese; Hiroko Makihara; Wen-Ning Zhao; Jasmin Lalonde; Haruko Nakamura; Glenn Konopaske; Michelle Sidor; Cameron D Pernia; Naoya Yamashita; Moyuka Wada; Yuuka Inoue; Fumio Nakamura; Steven D Sheridan; Ryan W Logan; Michael Brandel; Dongmei Wu; Joshua Hunsberger; Laurel Dorsett; Cordulla Duerr; Ranor C B Basa; Michael J McCarthy; Namrata D Udeshi; Philipp Mertins; Steven A Carr; Guy A Rouleau; Lina Mastrangelo; Jianxue Li; Gustavo J Gutierrez; Laurence M Brill; Nikolaos Venizelos; Guang Chen; Jeffrey S Nye; Husseini Manji; Jeffrey H Price; Colleen A McClung; Hagop S Akiskal; Martin Alda; De-Maw M Chuang; Joseph T Coyle; Yang Liu; Yang D Teng; Toshio Ohshima; Katsuhiko Mikoshiba; Richard L Sidman; Shelley Halpain; Stephen J Haggarty; Yoshio Goshima; Evan Y Snyder
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-12       Impact factor: 11.205

Review 2.  Quantitative Comparison of Proteomes Using SILAC.

Authors:  Jingjing Deng; Hediye Erdjument-Bromage; Thomas A Neubert
Journal:  Curr Protoc Protein Sci       Date:  2018-09-20

3.  The therapeutic response of CDDO-Me in the esophageal squamous cell carcinoma (ESCC) cells is mediated by CaMKIIα.

Authors:  Yan-Yang Wang; Shun Zhou; Ren Zhao; Ping Hai; Hong Zhe
Journal:  Am J Transl Res       Date:  2016-04-15       Impact factor: 4.060

4.  PLEKHA4/kramer Attenuates Dishevelled Ubiquitination to Modulate Wnt and Planar Cell Polarity Signaling.

Authors:  Adnan Shami Shah; Alex G Batrouni; Dongsung Kim; Amith Punyala; Wendy Cao; Chun Han; Michael L Goldberg; Marcus B Smolka; Jeremy M Baskin
Journal:  Cell Rep       Date:  2019-05-14       Impact factor: 9.423

5.  CILAIR-Based Secretome Analysis of Obese Visceral and Subcutaneous Adipose Tissues Reveals Distinctive ECM Remodeling and Inflammation Mediators.

Authors:  Arturo Roca-Rivada; Susana Belen Bravo; Diego Pérez-Sotelo; Jana Alonso; Ana Isabel Castro; Iván Baamonde; Javier Baltar; Felipe F Casanueva; María Pardo
Journal:  Sci Rep       Date:  2015-07-22       Impact factor: 4.379

Review 6.  The roles of protein expression in synaptic plasticity and memory consolidation.

Authors:  Tali Rosenberg; Shunit Gal-Ben-Ari; Daniela C Dieterich; Michael R Kreutz; Noam E Ziv; Eckart D Gundelfinger; Kobi Rosenblum
Journal:  Front Mol Neurosci       Date:  2014-11-12       Impact factor: 5.639

7.  Actin nucleation at the centrosome controls lymphocyte polarity.

Authors:  Dorian Obino; Francesca Farina; Odile Malbec; Pablo J Sáez; Mathieu Maurin; Jérémie Gaillard; Florent Dingli; Damarys Loew; Alexis Gautreau; Maria-Isabel Yuseff; Laurent Blanchoin; Manuel Théry; Ana-Maria Lennon-Duménil
Journal:  Nat Commun       Date:  2016-03-18       Impact factor: 14.919

Review 8.  Mass Spectrometry-Based Metabolomic and Proteomic Strategies in Organic Acidemias.

Authors:  Esther Imperlini; Lucia Santorelli; Stefania Orrù; Emanuela Scolamiero; Margherita Ruoppolo; Marianna Caterino
Journal:  Biomed Res Int       Date:  2016-06-14       Impact factor: 3.411

Review 9.  The Human Skeletal Muscle Proteome Project: a reappraisal of the current literature.

Authors:  Marta Gonzalez-Freire; Richard D Semba; Ceereena Ubaida-Mohien; Elisa Fabbri; Paul Scalzo; Kurt Højlund; Craig Dufresne; Alexey Lyashkov; Luigi Ferrucci
Journal:  J Cachexia Sarcopenia Muscle       Date:  2016-08-03       Impact factor: 12.910

10.  Translatome Regulation in Neuronal Injury and Axon Regrowth.

Authors:  Meir Rozenbaum; Marek Rajman; Ida Rishal; Indrek Koppel; Sandip Koley; Katalin F Medzihradszky; Juan A Oses-Prieto; Riki Kawaguchi; Paul S Amieux; Alma L Burlingame; Giovanni Coppola; Mike Fainzilber
Journal:  eNeuro       Date:  2018-05-10
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