Literature DB >> 24951780

Abundance and diversity of soybean-nodulating rhizobia in black soil are impacted by land use and crop management.

Jun Yan1, Xiao Zeng Han2, Zhao Jun Ji3, Yan Li4, En Tao Wang5, Zhi Hong Xie6, Wen Feng Chen7.   

Abstract

To investigate the effects of land use and crop management on soybean rhizobial communities, 280 nodule isolates were trapped from 7 fields with different land use and culture histories. Besides the known Bradyrhizobium japonicum, three novel genospecies were isolated from these fields. Grassland (GL) maintained a higher diversity of soybean bradyrhizobia than the other cultivation systems. Two genospecies (Bradyrhizobium spp. I and III) were distributed widely in all treatments, while Bradyrhizobium sp. II was found only in GL treatment. Cultivation with soybeans increased the rhizobial abundance and diversity, except for the soybean monoculture (S-S) treatment. In monoculture systems, soybeans favored Bradyrhizobium sp. I, while maize and wheat favored Bradyrhizobium sp. III. Fertilization decreased the rhizobial diversity indexes but did not change the species composition. The organic carbon (OC) and available phosphorus (AP) contents and pH were the main soil parameters positively correlated with the distribution of Bradyrhizobium spp. I and II and Bradyrhizobium japonicum and negatively correlated with Bradyrhizobium sp. III. These results revealed that different land uses and crop management could not only alter the diversity and abundance of soybean rhizobia, but also change interactions between rhizobia and legume or nonlegume plants, which offered novel information about the biogeography of rhizobia.
Copyright © 2014, American Society for Microbiology. All Rights Reserved.

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Year:  2014        PMID: 24951780      PMCID: PMC4136101          DOI: 10.1128/AEM.01135-14

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  30 in total

1.  Change in land use alters the diversity and composition of Bradyrhizobium communities and led to the introduction of Rhizobium etli into the tropical rain forest of Los Tuxtlas (Mexico).

Authors:  Ernesto Ormeño-Orrillo; Marco A Rogel-Hernández; Lourdes Lloret; Aline López-López; Julio Martínez; Isabelle Barois; Esperanza Martínez-Romero
Journal:  Microb Ecol       Date:  2011-11-23       Impact factor: 4.552

2.  Direct amplification of rhizobial nodC sequences from soil total DNA and comparison to nodC diversity of root nodule isolates.

Authors:  Sarita Sarita; Parveen K Sharma; Ursula B Priefer; Juergen Prell
Journal:  FEMS Microbiol Ecol       Date:  2005-09-01       Impact factor: 4.194

3.  Long-term effects of crop management on Rhizobium leguminosarum biovar viciae populations.

Authors:  Géraldine Depret; Sabine Houot; Marie-Reine Allard; Marie-Christine Breuil; Rachida Nouaïm; Gisèle Laguerre
Journal:  FEMS Microbiol Ecol       Date:  2004-12-27       Impact factor: 4.194

4.  Genetic diversity and biogeography of rhizobia associated with Caragana species in three ecological regions of China.

Authors:  Yang Li Lu; Wen Feng Chen; En Tao Wang; Su Hua Guan; Xue Rui Yan; Wen Xin Chen
Journal:  Syst Appl Microbiol       Date:  2009-02-04       Impact factor: 4.022

5.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

6.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

7.  Diversity in a promiscuous group of rhizobia from three Sesbania spp. colonizing ecologically distinct habitats of the semi-arid Delhi region.

Authors:  Radhey Shyam Sharma; Asif Mohmmed; Vandana Mishra; Cherukuri Raghavendra Babu
Journal:  Res Microbiol       Date:  2005 Jan-Feb       Impact factor: 3.992

8.  Classification of rhizobia based on nodC and nifH gene analysis reveals a close phylogenetic relationship among Phaseolus vulgaris symbionts.

Authors:  Gisèle Laguerre; Sarah M Nour; Valérie Macheret; Juan Sanjuan; Pascal Drouin; Noëlle Amarger
Journal:  Microbiology       Date:  2001-04       Impact factor: 2.777

9.  Genetic diversity of native bradyrhizobia isolated from soybeans (Glycine max L.) in different agricultural-ecological-climatic regions of India.

Authors:  Chinnaswamy Appunu; Angèle N'Zoue; Gisèle Laguerre
Journal:  Appl Environ Microbiol       Date:  2008-08-01       Impact factor: 4.792

10.  Genetic diversity and geographical distribution of indigenous soybean-nodulating bradyrhizobia in the United States.

Authors:  Sokichi Shiro; Syota Matsuura; Rina Saiki; Gilbert C Sigua; Akihiro Yamamoto; Yosuke Umehara; Masaki Hayashi; Yuichi Saeki
Journal:  Appl Environ Microbiol       Date:  2013-04-05       Impact factor: 4.792

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  11 in total

1.  Aeschynomene indica-Nodulating Rhizobia Lacking Nod Factor Synthesis Genes: Diversity and Evolution in Shandong Peninsula, China.

Authors:  Zhenpeng Zhang; Yan Li; Xiaohan Pan; Shuai Shao; Wei Liu; En-Tao Wang; Zhihong Xie
Journal:  Appl Environ Microbiol       Date:  2019-10-30       Impact factor: 4.792

2.  Genetic diversity of indigenous soybean-nodulating rhizobia in response to locally-based long term fertilization in a Mollisol of Northeast China.

Authors:  Jun Yan; WenFeng Chen; XiaoZeng Han; EnTao Wang; WenXiu Zou; ZhiMing Zhang
Journal:  World J Microbiol Biotechnol       Date:  2016-11-15       Impact factor: 3.312

3.  Long-Term Exposure of Agricultural Soil to Veterinary Antibiotics Changes the Population Structure of Symbiotic Nitrogen-Fixing Rhizobacteria Occupying Nodules of Soybeans (Glycine max).

Authors:  Cécile Revellin; Alain Hartmann; Sébastien Solanas; Edward Topp
Journal:  Appl Environ Microbiol       Date:  2018-04-16       Impact factor: 4.792

4.  Impact of Soybean Nodulation Phenotypes and Nitrogen Fertilizer Levels on the Rhizosphere Bacterial Community.

Authors:  Hao Wang; Chuntao Gu; Xiaofeng Liu; Chunwei Yang; Wenbin Li; Shaodong Wang
Journal:  Front Microbiol       Date:  2020-05-12       Impact factor: 5.640

5.  Highly diverse root endophyte bacterial community is driven by growth substrate and is plant genotype-independent in common bean (Phaseolus vulgaris L.).

Authors:  Aarón Barraza; Juan Carlos Vizuet-de-Rueda; Raúl Alvarez-Venegas
Journal:  PeerJ       Date:  2020-06-26       Impact factor: 2.984

6.  Combined Impact of No-Till and Cover Crops with or without Short-Term Water Stress as Revealed by Physicochemical and Microbiological Indicators.

Authors:  Eren Taskin; Roberta Boselli; Andrea Fiorini; Chiara Misci; Federico Ardenti; Francesca Bandini; Lorenzo Guzzetti; Davide Panzeri; Nicola Tommasi; Andrea Galimberti; Massimo Labra; Vincenzo Tabaglio; Edoardo Puglisi
Journal:  Biology (Basel)       Date:  2021-01-01

Review 7.  Rhizobial-Host Interactions and Symbiotic Nitrogen Fixation in Legume Crops Toward Agriculture Sustainability.

Authors:  Ravinder K Goyal; Autar K Mattoo; Maria Augusta Schmidt
Journal:  Front Microbiol       Date:  2021-06-11       Impact factor: 5.640

8.  Soybean Nodulation Response to Cropping Interval and Inoculation in European Cropping Systems.

Authors:  Mosab Halwani; Moritz Reckling; Dilfuza Egamberdieva; Richard Ansong Omari; Sonoko D Bellingrath-Kimura; Johann Bachinger; Ralf Bloch
Journal:  Front Plant Sci       Date:  2021-06-04       Impact factor: 5.753

9.  Short-term fertilizer application alters phenotypic traits of symbiotic nitrogen fixing bacteria.

Authors:  Anna K Simonsen; Shery Han; Phil Rekret; Christine S Rentschler; Katy D Heath; John R Stinchcombe
Journal:  PeerJ       Date:  2015-10-08       Impact factor: 2.984

10.  Influence of flooding and soil properties on the genetic diversity and distribution of indigenous soybean-nodulating bradyrhizobia in the Philippines.

Authors:  Maria Luisa Tabing Mason; Baby Lyn Cortez Tabing; Akihiro Yamamoto; Yuichi Saeki
Journal:  Heliyon       Date:  2018-11-16
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