| Literature DB >> 24947936 |
Qiliu Peng, Xianjun Lao, Weizhong Tang, Zhiping Chen, Ruolin Li, Xue Qin1, Shan Li.
Abstract
BACKGROUND: Published studies investigating the association between XPC Lys939Gln polymorphism and colorectal cancer (CRC) risk reported inconclusive results. We performed a meta-analysis to derive a precise estimation of the relationship.Entities:
Mesh:
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Year: 2014 PMID: 24947936 PMCID: PMC4098961 DOI: 10.1186/1746-1596-9-120
Source DB: PubMed Journal: Diagn Pathol ISSN: 1746-1596 Impact factor: 2.644
Scale for quality assessment
| Representativeness of cases | |
| Selected from cancer registry or multiple cancer center sites | 2 |
| Selected from oncology department or cancer institute | 1 |
| Selected without clearly defined sampling frame or with extensive inclusion/exclusion criteria | 0 |
| Source of controls | |
| Population or community based | 2 |
| Both population-based and hospital-based/healthy volunteers/blood donors | 1.5 |
| Hospital-based controls without colorectal cancer | 1 |
| Cancer-free controls without total description | 0.5 |
| Not described | 0 |
| Ascertainment of colorectal cancer | |
| Histological or pathological confirmation | 2 |
| Diagnosis of colorectal cancer by patient medical record | 1 |
| Not described | 0 |
| Sample size | |
| >1000 | 2 |
| 200-1000 | 1 |
| <200 | 0 |
| Quality control of genotyping methods | |
| Clearly described a different genotyping assay to confirm the data | 1 |
| Not described | 0 |
| Hardy-Weinberg equilibrium | |
| Hardy-Weinberg equilibrium in controls | 1 |
| Hardy-Weinberg disequilibrium in controls | 0.5 |
| No checking for Hardy-Weinberg disequilibrium | 0 |
Characteristics of eligible studies
| Pardini 2008 | Czech | Caucasian | 532/532 | PCR-RFLP | HC | HB | Age and sex | 8 | 0.165 |
| Gil 2012 | Poland | Caucasian | 133/100 | PCR-RFLP | NR | HB | Region | 3.5 | 0.803 |
| Yue 2013 | China | Asian | 428/450 | PCR-RFLP | PC | HB | Age and sex | 6 | 0.964 |
| Aizat 2013 | Malaysia | Asian | 255/255 | PCR-RFLP | HC | HB | NR | 5 | 0.316 |
| Engin 2010 | Turkey | Caucasian | 110/116 | PCR-RFLP | NR | HB | NR | 5 | 0.642 |
| Wu 2011 | China | Asian | 420/842 | PCR-RFLP | HC | PB | Age, sex, smoking and BMI | 9 | 0.639 |
| Liu 2012 | China | Asian | 1028/1085 | PCR-RFLP | HC | HB | Age and sex | 8 | 0.740 |
| Hansen 2007 | Denmark | Caucasian | 395/797 | Endpoint reading | NR | PB | Sex | 7.5 | 0.112 |
HC, Histologically confirmed; PC, Pathologically confirmed; NR Not reported; PB, Population–based; HB, Hospital–based; HWE, Hardy–Weinberg equilibrium in control population; PCR–RFLP, Polymerase chain reaction-restriction fragment length polymorphism.
Meta-analysis of Lys939Gln polymorphism and colorectal cancer risk
| Overall | 8 | 1.134(0.979-1.315) | 0.094/0.495 | 1.293(1.169-1.430) | 0.000/0.943 | 1.260(1.145-1.388) | 0.000/0.955 | 0.976(0.853-1.117) | 0.722/0.211 |
| Ethnicity | | | | | | | | | |
| Caucasian | 4 | 1.038(0.818-1.318) | 0.758/0.885 | 1.200(0.983-1.426) | 0.098/0.918 | 1.159(0.984-1.365) | 0.077/0.951 | 0.915(0.740-1.133) | 0.417/0.644 |
| Asian | 4 | 1.199(0.993-1.446) | 0.059/0.180 | 1.345(1.187-1.523) | 0.000/0.878 | 1.317(1.170-1.484) | 0.000/0.978 | 1.078(0.809-1.436) | 0.607/0.061 |
| Source of control | | | | | | | | | |
| HB | 6 | 1.091(0.915-1.302) | 0.333/0.399 | 1.335(1.182-1.507) | 0.000/0.961 | 1.282(1.142-1.439) | 0.000/0.945 | 0.922(0.785-1.082) | 0.318/0.184 |
| PB | 2 | 1.243(0.950-1.627) | 0.112/0.440 | 1.204(1.003-1.444) | 0.046/0.528 | 1.213(1.020-1.443) | 0.029/0.436 | 1.122(0.875-1.438) | 0.366/0.545 |
| Cancer location | | | | | | | | | |
| Colon | 2 | 1.105(0.809-1.510) | 0.528/0.327 | 1.278(0.983-1.601) | 0.093/0.851 | 1.234(0.996-1.528) | 0.054/0.826 | 0.953(0.719-1.264) | 0.738/0.226 |
| Rectum | 2 | 1.253(0.902-1.741) | 0.179/0.482 | 1.200(0.941-1.532) | 0.142/0.471 | 1.217(0.967-1.531) | 0.094/0.419 | 1.140(0.847-1.534) | 0.388/0.643 |
| Smoking | | | | | | | | | |
| Yes | 3 | 1.299(0.841-2.006) | 0.237/0.169 | 1.164(0.871-1.556) | 0.305/0.825 | 1.118(0.900-1.389) | 0.314/0.455 | 1.185(0.794-1.770) | 0.405/0.261 |
| No | 2 | 1.256(0.620-2.542) | 0.527/— | 1.284(0.817-2.018) | 0.279/— | 1.286(1.020-1.622) | 0.033/0.972 | 1.117(0.570-2.187) | 0.747/— |
| Study quality | | | | | | | | | |
| High quality | 4 | 1.093(0.920-1.299) | 0.313/0.547 | 1.290(1.148-1.450) | 0.000/0.531 | 1.248(1.117-1.395) | 0.000/0.680 | 0.950(0.811-1.114) | 0.530/0.310 |
| Low quality | 4 | 1.257(0.944-1.674) | 0.118/0.304 | 1.201(0.963-1.563) | 0.091/0.996 | 1.278(0.971-1.552) | 0.108/0.929 | 1.046(0.809-1.353) | 0.733/0.128 |
PQ P values of Q-test for heterogeneity test. OR, odds ratio; CI, confidence intervals; HWE, Hardy–Weinberg equilibrium.
Figure 1Forest plot of subgroup analysis by ethnicity on the association between Lys939Gln polymorphism and CRC risk using a fixed-effect model (Glnlys vs. LysLys).
Figure 2Forest plot of subgroup analysis by ethnicity on the association between Lys939Gln polymorphism and CRC risk using a fixed-effect model (dominant model GlnGln + Glnlys vs. LysLys).
Figure 3Sensitivity analysis of Lys939Gln polymorphism and CRC risk in the overall populations. This figures show the influence of individual studies on the summary OR. The middle vertical axis indicates the overall OR and the two vertical axes indicate its 95% CI. Every hollow round indicates the pooled OR when the left study is omitted in this meta-analysis. The two ends of every broken line represent the 95% CI. A Glnlys vs. LysLys; B dominant model GlnGln + Glnlys vs. LysLys.
Figure 4Funnel plots for publication bias of the meta-analysis on the association between Lys939Gln polymorphism and CRC risk in the overall populations. A Glnlys vs. LysLys; B dominant model GlnGln + Glnlys vs. LysLys.