Literature DB >> 24940294

trans-2,5-Di-methyl-piperazine-1,4-diium dinitrate.

Sofian Gatfaoui1, Thierry Roisnel2, Hassouna Dhaouadi3, Houda Marouani1.   

Abstract

In the structure of the title salt, C6H16N2 (2+)·2NO3 (-), the cations are connected to the anions through bifurcated N-H⋯(O,O) and weak C-H⋯O hydrogen bonds, generating corrugated layers parallel to the (100) plane. The organic cation is centrosymmetric and the diprotonated piperazine ring adopts a chair conformation, with the methyl groups occupying equatorial positions.

Entities:  

Year:  2014        PMID: 24940294      PMCID: PMC4051050          DOI: 10.1107/S1600536814012100

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pharmacological properties of piperazine, see: Conrado et al. (2008 ▶). For related structures, see: Gatfaoui et al. (2013 ▶, 2014a ▶,b ▶); Marouani et al. (2012 ▶); Kefi et al. (2013 ▶). For a complex of the title cation, see: Rother et al. (1997 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C6H16N2 2+·2NO3 − M = 240.23 Monoclinic, a = 7.0357 (8) Å b = 10.0277 (10) Å c = 8.3112 (8) Å β = 116.149 (8)° V = 526.36 (9) Å3 Z = 2 Mo Kα radiation μ = 0.13 mm−1 T = 150 K 0.58 × 0.46 × 0.23 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2006 ▶) T min = 0.827, T max = 0.970 4126 measured reflections 1195 independent reflections 1059 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.090 S = 1.11 1195 reflections 74 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2006 ▶); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg & Putz 2005 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and CRYSCAL (T. Roisnel, local program). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814012100/bg2529sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814012100/bg2529Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814012100/bg2529Isup3.cml CCDC reference: 1005191 Additional supporting information: crystallographic information; 3D view; checkCIF report
C6H16N22+·2NO3F(000) = 256
Mr = 240.23Dx = 1.516 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2153 reflections
a = 7.0357 (8) Åθ = 3.4–27.4°
b = 10.0277 (10) ŵ = 0.13 mm1
c = 8.3112 (8) ÅT = 150 K
β = 116.149 (8)°Prism, colourless
V = 526.36 (9) Å30.58 × 0.46 × 0.23 mm
Z = 2
Bruker APEXII diffractometer1059 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.022
CCD rotation images, thin slices scansθmax = 27.5°, θmin = 3.4°
Absorption correction: multi-scan (SADABS; Bruker, 2006)h = −8→9
Tmin = 0.827, Tmax = 0.970k = −9→12
4126 measured reflectionsl = −10→10
1195 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090H-atom parameters constrained
S = 1.11w = 1/[σ2(Fo2) + (0.0438P)2 + 0.1423P] where P = (Fo2 + 2Fc2)/3
1195 reflections(Δ/σ)max < 0.001
74 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.20352 (15)−0.09103 (10)−0.37280 (12)0.0173 (2)
O10.12714 (14)−0.13760 (9)−0.27150 (11)0.0218 (2)
O20.24377 (15)−0.16754 (10)−0.47090 (11)0.0255 (2)
O30.23709 (16)0.03059 (9)−0.36962 (13)0.0312 (3)
N2−0.02504 (15)0.08866 (10)−0.14298 (12)0.0169 (2)
H2A−0.06830.1671−0.20010.020*
H2B0.02820.0397−0.20440.020*
C10.14685 (18)0.11399 (12)0.04232 (15)0.0165 (3)
H10.09150.17300.10570.020*
C20.21154 (17)−0.01747 (12)0.14274 (15)0.0176 (3)
H2C0.2778−0.07360.08690.021*
H2D0.3146−0.00070.26530.021*
C30.33291 (19)0.18189 (13)0.03060 (17)0.0224 (3)
H3A0.39300.1230−0.02570.034*
H3B0.43810.20360.14900.034*
H3C0.28540.2621−0.03890.034*
U11U22U33U12U13U23
N10.0184 (5)0.0158 (5)0.0155 (5)0.0005 (4)0.0054 (4)0.0005 (4)
O10.0288 (5)0.0212 (5)0.0202 (4)−0.0019 (3)0.0153 (4)−0.0007 (3)
O20.0331 (5)0.0274 (5)0.0203 (4)0.0033 (4)0.0158 (4)−0.0025 (4)
O30.0356 (5)0.0134 (5)0.0400 (6)−0.0040 (4)0.0125 (4)0.0023 (4)
N20.0199 (5)0.0162 (5)0.0150 (5)0.0030 (4)0.0081 (4)0.0023 (4)
C10.0185 (5)0.0144 (6)0.0161 (5)0.0018 (4)0.0071 (4)−0.0010 (4)
C20.0166 (5)0.0168 (6)0.0178 (5)0.0020 (4)0.0062 (4)0.0016 (4)
C30.0207 (6)0.0178 (6)0.0287 (6)0.0003 (5)0.0112 (5)0.0009 (5)
N1—O21.2398 (13)C1—C21.5188 (17)
N1—O31.2403 (14)C1—H10.9800
N1—O11.2706 (13)C2—N2i1.4945 (15)
N2—C2i1.4945 (15)C2—H2C0.9700
N2—C11.5024 (14)C2—H2D0.9700
N2—H2A0.9000C3—H3A0.9600
N2—H2B0.9000C3—H3B0.9600
C1—C31.5163 (17)C3—H3C0.9600
O2—N1—O3121.73 (10)C2—C1—H1108.8
O2—N1—O1119.62 (10)N2i—C2—C1111.39 (9)
O3—N1—O1118.65 (10)N2i—C2—H2C109.4
C2i—N2—C1112.95 (9)C1—C2—H2C109.4
C2i—N2—H2A109.0N2i—C2—H2D109.4
C1—N2—H2A109.0C1—C2—H2D109.4
C2i—N2—H2B109.0H2C—C2—H2D108.0
C1—N2—H2B109.0C1—C3—H3A109.5
H2A—N2—H2B107.8C1—C3—H3B109.5
N2—C1—C3109.74 (9)H3A—C3—H3B109.5
N2—C1—C2109.11 (9)C1—C3—H3C109.5
C3—C1—C2111.53 (10)H3A—C3—H3C109.5
N2—C1—H1108.8H3B—C3—H3C109.5
C3—C1—H1108.8
D—H···AD—HH···AD···AD—H···A
N2—H2A···O1ii0.901.992.8471 (14)158
N2—H2A···O2iii0.902.452.9899 (13)119
N2—H2B···O10.902.072.9057 (13)153
N2—H2B···O30.902.423.2172 (14)149
C1—H1···O1i0.982.503.2614 (14)134
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2A⋯O1i 0.901.992.8471 (14)158
N2—H2A⋯O2ii 0.902.452.9899 (13)119
N2—H2B⋯O10.902.072.9057 (13)153
N2—H2B⋯O30.902.423.2172 (14)149
C1—H1⋯O1iii 0.982.503.2614 (14)134

Symmetry codes: (i) ; (ii) ; (iii) .

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