Literature DB >> 24940240

2-Meth-oxy-4-(2-meth-oxy-phen-yl)-5,6,7,8,9,10-hexa-hydro-cyclo-octa-[b]pyridine-3-carbo-nitrile.

R Vishnupriya1, J Suresh1, S Maharani2, R Ranjith Kumar2, P L Nilantha Lakshman3.   

Abstract

In the title compound, C20H22N2O2, the central pyridine ring forms a dihedral angle of 76.32 (8)° with the pseudo-axial benzene ring. The cyclo-octane ring adopts a twisted boat chair conformation. In the crystal, weak inter-molecular C-H⋯π inter-actions between inversion-related mol-ecules result in the formation of linear double chains along the b-axis direction.

Entities:  

Year:  2014        PMID: 24940240      PMCID: PMC4051075          DOI: 10.1107/S1600536814010332

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activities of substituted pyridine derivatives, see: Yao et al. (1994 ▶); Lohaus & Dittmar (1968 ▶). For a description of structure correlation, bond lengths and angles, see: Allen et al. (1987 ▶). For ring conformation parameters, see: Cremer & Pople (1975 ▶). The linearity of the cyano group seen in the title compound is typical of this class of 2-oxo­pyridine-3-carbo­nitrile compounds, see: Black et al. (1992 ▶); Hussain et al. (1996 ▶).

Experimental

Crystal data

C20H22N2O2 M = 322.40 Monoclinic, a = 11.1652 (10) Å b = 11.4205 (9) Å c = 14.8540 (11) Å β = 111.763 (2)° V = 1759.1 (2) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.30 × 0.29 × 0.25 mm

Data collection

Bruker Kappa APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.977, T max = 0.981 23618 measured reflections 3266 independent reflections 2251 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.137 S = 1.05 3266 reflections 217 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.29 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814010332/gg2137sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814010332/gg2137Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814010332/gg2137Isup3.cml CCDC reference: 1001458 Additional supporting information: crystallographic information; 3D view; checkCIF report
C20H22N2O2F(000) = 688
Mr = 322.40Dx = 1.217 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2000 reflections
a = 11.1652 (10) Åθ = 2–26°
b = 11.4205 (9) ŵ = 0.08 mm1
c = 14.8540 (11) ÅT = 293 K
β = 111.763 (2)°Block, colourless
V = 1759.1 (2) Å30.30 × 0.29 × 0.25 mm
Z = 4
Bruker Kappa APEXII diffractometer3266 independent reflections
Radiation source: fine-focus sealed tube2251 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.029
Detector resolution: 0 pixels mm-1θmax = 25.5°, θmin = 2.3°
ω and φ scansh = −13→13
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −13→13
Tmin = 0.977, Tmax = 0.981l = −17→17
23618 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.137H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0486P)2 + 0.8085P] where P = (Fo2 + 2Fc2)/3
3266 reflections(Δ/σ)max < 0.001
217 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.13770 (18)0.36565 (16)0.23039 (14)0.0433 (5)
C20.2136 (2)0.47203 (18)0.22349 (17)0.0564 (6)
H2A0.25780.45440.17980.068*
H2B0.27900.48710.28700.068*
C30.1343 (2)0.58356 (19)0.18823 (16)0.0601 (6)
H3A0.18580.63830.16790.072*
H3B0.05940.56390.13130.072*
C40.0876 (2)0.64636 (19)0.25967 (17)0.0629 (6)
H4A0.16150.65980.31900.075*
H4B0.05450.72240.23280.075*
C5−0.0158 (2)0.5844 (2)0.28588 (18)0.0645 (6)
H5A−0.07830.64230.28790.077*
H5B−0.06040.52970.23430.077*
C60.0304 (3)0.5184 (2)0.38079 (17)0.0655 (6)
H6A−0.04300.47900.38730.079*
H6B0.06240.57460.43320.079*
C70.1354 (2)0.42796 (19)0.39301 (15)0.0574 (6)
H7A0.21470.46830.39980.069*
H7B0.15050.38440.45230.069*
C80.10287 (18)0.34305 (16)0.30965 (13)0.0424 (4)
C90.03020 (18)0.24227 (16)0.30695 (13)0.0407 (4)
C10−0.00175 (18)0.16888 (16)0.22689 (13)0.0413 (4)
C110.03687 (18)0.20046 (16)0.15077 (13)0.0419 (5)
C12−0.0716 (2)0.06187 (19)0.22081 (15)0.0559 (6)
C130.0307 (3)0.1604 (2)−0.00811 (16)0.0795 (8)
H13A−0.00030.1013−0.05740.119*
H13B0.12230.16830.01080.119*
H13C−0.01020.2337−0.03300.119*
C91−0.0182 (2)0.21394 (17)0.38544 (15)0.0506 (5)
C92−0.1455 (3)0.2350 (2)0.3709 (2)0.0728 (7)
H92−0.20060.26610.31240.087*
C93−0.1909 (4)0.2101 (3)0.4427 (4)0.1232 (16)
H93−0.27700.22390.43270.148*
C94−0.1098 (7)0.1649 (3)0.5291 (4)0.140 (2)
H94−0.14120.14870.57760.167*
C950.0175 (5)0.1433 (3)0.5450 (2)0.1061 (13)
H950.07240.11300.60400.127*
C960.0628 (3)0.1673 (2)0.47174 (16)0.0682 (7)
C970.2778 (4)0.1043 (3)0.5663 (2)0.1477 (19)
H97A0.35960.09350.55990.222*
H97B0.24850.03080.58180.222*
H97C0.28710.15960.61710.222*
N10.10398 (15)0.29525 (13)0.15152 (11)0.0449 (4)
N2−0.1246 (3)−0.0247 (2)0.21553 (17)0.0915 (8)
O10.00127 (16)0.12727 (12)0.07402 (10)0.0586 (4)
O20.1868 (2)0.14718 (16)0.47771 (13)0.0875 (6)
U11U22U33U12U13U23
C10.0415 (11)0.0372 (10)0.0509 (11)−0.0009 (8)0.0167 (9)0.0006 (9)
C20.0571 (13)0.0514 (13)0.0674 (14)−0.0139 (10)0.0309 (11)−0.0060 (11)
C30.0770 (16)0.0461 (12)0.0592 (13)−0.0144 (11)0.0276 (12)0.0010 (10)
C40.0774 (16)0.0416 (12)0.0674 (15)−0.0042 (11)0.0244 (12)−0.0003 (11)
C50.0678 (15)0.0527 (13)0.0741 (16)0.0009 (11)0.0275 (13)−0.0095 (12)
C60.0912 (18)0.0495 (13)0.0666 (15)−0.0145 (12)0.0418 (13)−0.0169 (11)
C70.0752 (15)0.0499 (12)0.0419 (11)−0.0153 (11)0.0155 (10)−0.0025 (9)
C80.0453 (11)0.0368 (10)0.0417 (10)−0.0017 (8)0.0121 (9)0.0003 (8)
C90.0440 (10)0.0351 (9)0.0429 (10)0.0029 (8)0.0159 (8)0.0036 (8)
C100.0470 (11)0.0329 (9)0.0451 (10)0.0001 (8)0.0182 (9)0.0026 (8)
C110.0489 (11)0.0338 (10)0.0431 (10)0.0033 (8)0.0172 (9)−0.0002 (8)
C120.0764 (15)0.0459 (12)0.0517 (12)−0.0099 (11)0.0309 (11)−0.0051 (10)
C130.137 (2)0.0623 (15)0.0528 (13)−0.0205 (16)0.0502 (15)−0.0071 (12)
C910.0692 (14)0.0376 (10)0.0517 (12)−0.0090 (10)0.0300 (11)−0.0072 (9)
C920.0771 (17)0.0589 (15)0.103 (2)−0.0064 (13)0.0573 (16)−0.0143 (14)
C930.164 (4)0.089 (2)0.191 (4)−0.038 (2)0.151 (4)−0.050 (3)
C940.277 (7)0.083 (2)0.139 (4)−0.083 (3)0.171 (5)−0.056 (2)
C950.214 (4)0.0631 (18)0.0604 (16)−0.058 (2)0.074 (2)−0.0173 (13)
C960.107 (2)0.0470 (13)0.0490 (13)−0.0246 (13)0.0276 (14)−0.0059 (11)
C970.147 (3)0.098 (2)0.105 (3)−0.044 (2)−0.061 (2)0.048 (2)
N10.0512 (10)0.0376 (9)0.0501 (9)0.0003 (7)0.0237 (8)0.0013 (7)
N20.133 (2)0.0638 (14)0.0897 (16)−0.0438 (14)0.0552 (15)−0.0150 (12)
O10.0903 (11)0.0440 (8)0.0488 (8)−0.0127 (8)0.0342 (8)−0.0068 (7)
O20.0884 (14)0.0793 (13)0.0679 (11)−0.0022 (10)−0.0025 (10)0.0277 (9)
C1—N11.354 (2)C10—C111.399 (3)
C1—C21.506 (3)C10—C121.434 (3)
C1—C81.394 (3)C11—N11.314 (2)
C2—C31.529 (3)C11—O11.349 (2)
C2—H2A0.9700C12—N21.140 (3)
C2—H2B0.9700C13—O11.427 (3)
C3—C41.524 (3)C13—H13A0.9600
C3—H3A0.9700C13—H13B0.9600
C3—H3B0.9700C13—H13C0.9600
C4—C51.523 (3)C91—C961.373 (3)
C4—H4A0.9700C91—C921.377 (3)
C4—H4B0.9700C92—C931.370 (4)
C5—C61.511 (3)C92—H920.9300
C5—H5A0.9700C93—C941.368 (6)
C5—H5B0.9700C93—H930.9300
C6—C71.522 (3)C94—C951.374 (6)
C6—H6A0.9700C94—H940.9300
C6—H6B0.9700C95—C961.387 (4)
C7—C81.507 (3)C95—H950.9300
C7—H7A0.9700C96—O21.373 (3)
C7—H7B0.9700C97—O21.418 (3)
C8—C91.400 (3)C97—H97A0.9600
C9—C101.389 (3)C97—H97B0.9600
C9—C911.491 (3)C97—H97C0.9600
N1—C1—C8123.06 (17)C10—C9—C91119.08 (16)
N1—C1—C2113.77 (17)C8—C9—C91122.01 (17)
C8—C1—C2123.16 (18)C9—C10—C11118.57 (17)
C1—C2—C3115.23 (18)C9—C10—C12121.95 (17)
C1—C2—H2A108.5C11—C10—C12119.48 (17)
C3—C2—H2A108.5N1—C11—O1120.39 (17)
C1—C2—H2B108.5N1—C11—C10123.46 (17)
C3—C2—H2B108.5O1—C11—C10116.15 (16)
H2A—C2—H2B107.5N2—C12—C10178.3 (3)
C4—C3—C2117.25 (19)O1—C13—H13A109.5
C4—C3—H3A108.0O1—C13—H13B109.5
C2—C3—H3A108.0H13A—C13—H13B109.5
C4—C3—H3B108.0O1—C13—H13C109.5
C2—C3—H3B108.0H13A—C13—H13C109.5
H3A—C3—H3B107.2H13B—C13—H13C109.5
C5—C4—C3116.56 (19)C96—C91—C92119.9 (2)
C5—C4—H4A108.2C96—C91—C9120.6 (2)
C3—C4—H4A108.2C92—C91—C9119.5 (2)
C5—C4—H4B108.2C93—C92—C91120.0 (3)
C3—C4—H4B108.2C93—C92—H92120.0
H4A—C4—H4B107.3C91—C92—H92120.0
C6—C5—C4116.2 (2)C94—C93—C92120.0 (4)
C6—C5—H5A108.2C94—C93—H93120.0
C4—C5—H5A108.2C92—C93—H93120.0
C6—C5—H5B108.2C93—C94—C95120.8 (3)
C4—C5—H5B108.2C93—C94—H94119.6
H5A—C5—H5B107.4C95—C94—H94119.6
C5—C6—C7115.56 (19)C94—C95—C96119.0 (4)
C5—C6—H6A108.4C94—C95—H95120.5
C7—C6—H6A108.4C96—C95—H95120.5
C5—C6—H6B108.4O2—C96—C91115.1 (2)
C7—C6—H6B108.4O2—C96—C95124.7 (3)
H6A—C6—H6B107.5C91—C96—C95120.2 (3)
C8—C7—C6113.47 (18)O2—C97—H97A109.5
C8—C7—H7A108.9O2—C97—H97B109.5
C6—C7—H7A108.9H97A—C97—H97B109.5
C8—C7—H7B108.9O2—C97—H97C109.5
C6—C7—H7B108.9H97A—C97—H97C109.5
H7A—C7—H7B107.7H97B—C97—H97C109.5
C1—C8—C9117.91 (17)C11—N1—C1118.11 (16)
C1—C8—C7121.13 (17)C11—O1—C13117.98 (16)
C9—C8—C7120.86 (17)C96—O2—C97118.4 (3)
C10—C9—C8118.87 (17)
N1—C1—C2—C396.0 (2)C12—C10—C11—O11.8 (3)
C8—C1—C2—C3−82.6 (3)C10—C9—C91—C96104.5 (2)
C1—C2—C3—C474.9 (3)C8—C9—C91—C96−78.0 (3)
C2—C3—C4—C5−69.3 (3)C10—C9—C91—C92−75.5 (2)
C3—C4—C5—C699.4 (2)C8—C9—C91—C92102.0 (2)
C4—C5—C6—C7−54.6 (3)C96—C91—C92—C930.4 (3)
C5—C6—C7—C8−51.8 (3)C9—C91—C92—C93−179.6 (2)
N1—C1—C8—C90.3 (3)C91—C92—C93—C940.4 (5)
C2—C1—C8—C9178.87 (18)C92—C93—C94—C95−0.4 (5)
N1—C1—C8—C7−176.05 (18)C93—C94—C95—C96−0.4 (5)
C2—C1—C8—C72.5 (3)C92—C91—C96—O2178.5 (2)
C6—C7—C8—C190.8 (2)C9—C91—C96—O2−1.5 (3)
C6—C7—C8—C9−85.4 (2)C92—C91—C96—C95−1.2 (3)
C1—C8—C9—C101.1 (3)C9—C91—C96—C95178.8 (2)
C7—C8—C9—C10177.50 (18)C94—C95—C96—O2−178.5 (3)
C1—C8—C9—C91−176.42 (18)C94—C95—C96—C911.2 (4)
C7—C8—C9—C910.0 (3)O1—C11—N1—C1−179.78 (17)
C8—C9—C10—C11−1.8 (3)C10—C11—N1—C10.2 (3)
C91—C9—C10—C11175.77 (18)C8—C1—N1—C11−1.0 (3)
C8—C9—C10—C12177.52 (19)C2—C1—N1—C11−179.66 (17)
C91—C9—C10—C12−4.9 (3)N1—C11—O1—C13−4.4 (3)
C9—C10—C11—N11.2 (3)C10—C11—O1—C13175.6 (2)
C12—C10—C11—N1−178.16 (19)C91—C96—O2—C97177.0 (2)
C9—C10—C11—O1−178.80 (16)C95—C96—O2—C97−3.3 (4)
D—H···AD—HH···AD···AD—H···A
C3—H3A···Cg1i0.972.643.742 (2)134
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the pyridine ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C3—H3ACg1i 0.972.643.742 (2)134

Symmetry code: (i) .

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3.  Structure validation in chemical crystallography.

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1.  Crystal structure of 1-benzyl-4-(4-chloro-phen-yl)-2-imino-1,2,5,6,7,8,9,10-octa-hydro-cyclo-octa-[b]pyridine-3-carbo-nitrile.

Authors:  R A Nagalakshmi; J Suresh; S Maharani; R Ranjith Kumar; P L Nilantha Lakshman
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-09-06

2.  Crystal structure of 1-benzyl-4-(2,4-di-chloro-phenyl)-2-imino-1,2,5,6,7,8,9,10-octa-hydro-cyclo-octa-[b]pyridine-3-carbo-nitrile.

Authors:  R A Nagalakshmi; J Suresh; S Maharani; R Ranjith Kumar; P L Nilantha Lakshman
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-10-31

3.  Isotypic crystal structures of 1-benzyl-4-(4-bromo-phen-yl)-2-imino-1,2,5,6,7,8,9,10-octa-hydro-cyclo-octa-[b]pyridine-3-carbo-nitrile and 1-benzyl-4-(4-fluoro-phen-yl)-2-imino-1,2,5,6,7,8,9,10-octa-hydro-cyclo-octa-[b]pyridine-3-carbo-nitrile.

Authors:  R A Nagalakshmi; J Suresh; S Maharani; R Ranjith Kumar; P L Nilantha Lakshman
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-10-18
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