Literature DB >> 24940229

4-Aza-niumyl-2,2,6,6-tetra-methyl-piperidin-1-ium dinitrate.

Hammouda Chebbi1, Ridha Ben Smail2, Mohamed Faouzi Zid3.   

Abstract

In the crystal structure of the title salt, C9H22N2 (2+)·2NO3 (-), the piperidine ring of the dication adopts a chair conformation and the orientation of the C-NH3 bond is equatorial. The ions are linked by normal and bifurcated N-H⋯O hydrogen bonds in R 2 (2)(6), two R 4 (2)(8) and R 3 (4)(14) graf-set motifs, generating a three-dimensional network.

Entities:  

Year:  2014        PMID: 24940229      PMCID: PMC4051017          DOI: 10.1107/S1600536814009787

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Chebbi & Driss (2001 ▶); El Glaoui, Mrad, Jenneau & Ben Nasr (2010 ▶); Mrad et al. (2009 ▶); Huang & Deng (2007 ▶). For hydrogen bonding and graph-set motifs, see: Jeffrey (1997 ▶); Bernstein et al. (1995 ▶); Etter et al. (1990 ▶). For ring-puckering parameters, see: Cremer & Pople (1975 ▶); Spek (2009 ▶).

Experimental

Crystal data

C9H22N2 2+·2NO3 M = 282.31 Monoclinic, a = 10.367 (2) Å b = 11.054 (1) Å c = 13.167 (2) Å β = 112.45 (2)° V = 1394.5 (4) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 298 K 0.45 × 0.30 × 0.25 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.860, T max = 0.978 2849 measured reflections 2731 independent reflections 1908 reflections with I > 2σ(I) R int = 0.017 2 standard reflections every 120 min intensity decay: 1.0%

Refinement

R[F 2 > 2σ(F 2)] = 0.044 wR(F 2) = 0.121 S = 1.05 2731 reflections 261 parameters All H-atom parameters refined Δρmax = 0.24 e Å−3 Δρmin = −0.15 e Å−3 Data collection: CAD-4 EXPRESS (Duisenberg, 1992 ▶; Macíček & Yordanov, 1992 ▶); cell refinement: CAD-4 EXPRESS; data reduction: MolEN (Fair, 1990 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2001 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536814009787/nc2324sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814009787/nc2324Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814009787/nc2324Isup3.cml CCDC reference: 1000438 Additional supporting information: crystallographic information; 3D view; checkCIF report
C9H22N22+·2NO3F(000) = 608
Mr = 282.31Dx = 1.345 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 25 reflections
a = 10.367 (2) Åθ = 10–15°
b = 11.054 (1) ŵ = 0.11 mm1
c = 13.167 (2) ÅT = 298 K
β = 112.45 (2)°Prism, dark brown
V = 1394.5 (4) Å30.45 × 0.30 × 0.25 mm
Z = 4
Enraf–Nonius CAD-4 diffractometer1908 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.017
Graphite monochromatorθmax = 26.0°, θmin = 2.5°
ω/2θ scansh = −11→12
Absorption correction: ψ scan (North et al., 1968)k = −13→0
Tmin = 0.860, Tmax = 0.978l = −16→0
2849 measured reflections2 standard reflections every 120 min
2731 independent reflections intensity decay: 1.0%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.044All H-atom parameters refined
wR(F2) = 0.121w = 1/[σ2(Fo2) + (0.0508P)2 + 0.3472P] where P = (Fo2 + 2Fc2)/3
S = 1.05(Δ/σ)max = 0.001
2731 reflectionsΔρmax = 0.24 e Å3
261 parametersΔρmin = −0.15 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.022 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.65815 (16)0.64785 (14)0.03529 (14)0.0327 (4)
H1A0.607 (2)0.614 (2)−0.0322 (19)0.051 (6)*
H1B0.636 (2)0.6145 (19)0.0858 (17)0.041 (6)*
N20.8793 (2)0.8680 (2)−0.10476 (17)0.0459 (5)
H2A0.972 (3)0.854 (2)−0.085 (2)0.072 (8)*
H2B0.857 (3)0.950 (3)−0.109 (2)0.076 (9)*
H2C0.838 (3)0.834 (2)−0.170 (2)0.059 (7)*
C10.80955 (19)0.61008 (17)0.06283 (15)0.0356 (5)
C20.8620 (2)0.67784 (19)−0.01499 (17)0.0392 (5)
H2D0.959 (2)0.666 (2)0.0075 (17)0.050 (6)*
H2E0.820 (2)0.6457 (19)−0.0867 (18)0.047 (6)*
C30.8315 (2)0.81240 (18)−0.02154 (16)0.0360 (5)
H30.881 (2)0.8515 (17)0.0414 (16)0.034 (5)*
C40.6767 (2)0.8365 (2)−0.05477 (18)0.0396 (5)
H4A0.627 (2)0.8029 (18)−0.1287 (18)0.044 (6)*
H4B0.660 (2)0.921 (2)−0.0601 (17)0.046 (6)*
C50.6175 (2)0.78055 (17)0.02436 (16)0.0366 (5)
C60.8059 (3)0.4739 (2)0.0425 (3)0.0533 (6)
H6A0.759 (3)0.455 (2)−0.032 (2)0.067 (8)*
H6B0.772 (3)0.431 (2)0.091 (2)0.068 (8)*
H6C0.899 (3)0.449 (3)0.060 (2)0.082 (9)*
C70.8987 (3)0.6347 (3)0.18384 (18)0.0512 (6)
H7A0.848 (3)0.609 (3)0.229 (2)0.088 (9)*
H7B0.922 (3)0.721 (3)0.201 (2)0.075 (8)*
H7C0.983 (3)0.587 (2)0.201 (2)0.072 (8)*
C80.6690 (3)0.8427 (2)0.1367 (2)0.0530 (6)
H8A0.625 (3)0.921 (3)0.127 (2)0.075 (8)*
H8B0.774 (3)0.854 (2)0.1702 (19)0.062 (7)*
H8C0.640 (2)0.798 (2)0.186 (2)0.059 (7)*
C90.4579 (2)0.7821 (2)−0.0251 (2)0.0513 (6)
H9A0.430 (3)0.867 (3)−0.038 (2)0.072 (8)*
H9B0.425 (2)0.742 (2)0.0249 (19)0.052 (6)*
H9C0.423 (3)0.732 (2)−0.099 (2)0.068 (7)*
N30.97658 (17)1.01245 (16)0.27175 (13)0.0414 (4)
O10.96306 (16)0.99288 (15)0.36111 (11)0.0581 (5)
O20.9133 (2)1.09726 (19)0.21402 (16)0.0806 (6)
O31.0499 (2)0.94507 (17)0.24364 (15)0.0735 (6)
N41.24475 (18)0.83006 (17)0.15347 (14)0.0452 (4)
O41.16626 (17)0.87793 (16)0.06514 (12)0.0578 (5)
O51.2237 (2)0.72440 (15)0.17517 (14)0.0692 (5)
O61.34062 (19)0.88941 (19)0.21907 (14)0.0779 (6)
U11U22U33U12U13U23
N10.0349 (9)0.0339 (9)0.0300 (8)−0.0027 (7)0.0131 (7)0.0000 (7)
N20.0492 (12)0.0511 (13)0.0432 (11)−0.0107 (10)0.0242 (9)0.0002 (9)
C10.0318 (10)0.0372 (11)0.0366 (10)0.0014 (8)0.0115 (8)0.0010 (8)
C20.0348 (11)0.0467 (12)0.0383 (11)0.0011 (9)0.0165 (9)−0.0018 (9)
C30.0367 (10)0.0423 (11)0.0298 (10)−0.0076 (9)0.0136 (8)−0.0026 (9)
C40.0411 (11)0.0366 (12)0.0404 (11)0.0002 (9)0.0149 (9)0.0060 (9)
C50.0392 (11)0.0316 (10)0.0409 (11)0.0008 (8)0.0176 (9)0.0004 (8)
C60.0536 (15)0.0400 (13)0.0697 (17)0.0061 (11)0.0273 (14)0.0030 (12)
C70.0458 (13)0.0594 (16)0.0384 (12)0.0019 (12)0.0049 (10)0.0069 (11)
C80.0714 (17)0.0443 (14)0.0518 (14)−0.0047 (12)0.0332 (13)−0.0113 (11)
C90.0405 (12)0.0452 (14)0.0740 (17)0.0067 (11)0.0284 (12)0.0114 (13)
N30.0442 (10)0.0464 (10)0.0364 (9)−0.0044 (8)0.0184 (8)−0.0020 (8)
O10.0696 (11)0.0758 (12)0.0380 (8)0.0214 (9)0.0308 (8)0.0116 (8)
O20.0791 (13)0.0862 (14)0.0787 (13)0.0209 (11)0.0326 (10)0.0404 (11)
O30.0933 (13)0.0714 (12)0.0814 (13)0.0112 (10)0.0620 (11)−0.0097 (10)
N40.0438 (10)0.0528 (12)0.0404 (10)0.0018 (9)0.0178 (8)0.0005 (9)
O40.0591 (10)0.0670 (11)0.0409 (8)0.0074 (8)0.0121 (7)0.0089 (8)
O50.0950 (14)0.0465 (10)0.0616 (11)−0.0037 (9)0.0247 (10)0.0053 (8)
O60.0676 (12)0.0939 (15)0.0564 (10)−0.0306 (11)0.0061 (9)−0.0065 (10)
N1—C51.518 (2)C5—C81.530 (3)
N1—C11.528 (2)C6—H6A0.94 (3)
N1—H1A0.93 (2)C6—H6B0.97 (3)
N1—H1B0.87 (2)C6—H6C0.95 (3)
N2—C31.496 (2)C7—H7A0.97 (3)
N2—H2A0.90 (3)C7—H7B0.99 (3)
N2—H2B0.93 (3)C7—H7C0.97 (3)
N2—H2C0.88 (3)C8—H8A0.97 (3)
C1—C21.527 (3)C8—H8B1.01 (2)
C1—C61.527 (3)C8—H8C0.95 (3)
C1—C71.530 (3)C9—H9A0.98 (3)
C2—C31.516 (3)C9—H9B0.95 (2)
C2—H2D0.94 (2)C9—H9C1.05 (3)
C2—H2E0.95 (2)N3—O31.219 (2)
C3—C41.517 (3)N3—O21.227 (2)
C3—H30.90 (2)N3—O11.256 (2)
C4—C51.527 (3)N4—O61.228 (2)
C4—H4A0.98 (2)N4—O51.241 (2)
C4—H4B0.95 (2)N4—O41.254 (2)
C5—C91.530 (3)
C5—N1—C1120.63 (14)N1—C5—C4106.67 (15)
C5—N1—H1A105.5 (14)N1—C5—C9105.52 (16)
C1—N1—H1A106.3 (14)C4—C5—C9110.84 (17)
C5—N1—H1B109.7 (14)N1—C5—C8111.14 (17)
C1—N1—H1B104.7 (14)C4—C5—C8113.24 (18)
H1A—N1—H1B109.7 (19)C9—C5—C8109.1 (2)
C3—N2—H2A109.4 (16)C1—C6—H6A111.5 (16)
C3—N2—H2B107.5 (17)C1—C6—H6B111.3 (15)
H2A—N2—H2B113 (2)H6A—C6—H6B114 (2)
C3—N2—H2C111.5 (16)C1—C6—H6C107.1 (17)
H2A—N2—H2C106 (2)H6A—C6—H6C105 (2)
H2B—N2—H2C109 (2)H6B—C6—H6C107 (2)
C2—C1—C6110.92 (18)C1—C7—H7A109.7 (17)
C2—C1—N1107.66 (15)C1—C7—H7B113.9 (15)
C6—C1—N1105.86 (17)H7A—C7—H7B106 (2)
C2—C1—C7112.54 (18)C1—C7—H7C106.3 (15)
C6—C1—C7108.8 (2)H7A—C7—H7C110 (2)
N1—C1—C7110.82 (17)H7B—C7—H7C111 (2)
C3—C2—C1113.53 (16)C5—C8—H8A107.8 (15)
C3—C2—H2D109.4 (14)C5—C8—H8B113.4 (13)
C1—C2—H2D109.2 (13)H8A—C8—H8B109 (2)
C3—C2—H2E107.8 (13)C5—C8—H8C110.5 (14)
C1—C2—H2E109.8 (13)H8A—C8—H8C107 (2)
H2D—C2—H2E107.0 (18)H8B—C8—H8C109 (2)
N2—C3—C2108.91 (17)C5—C9—H9A106.6 (15)
N2—C3—C4109.06 (17)C5—C9—H9B108.1 (14)
C2—C3—C4111.33 (17)H9A—C9—H9B114 (2)
N2—C3—H3104.1 (12)C5—C9—H9C108.5 (14)
C2—C3—H3112.6 (12)H9A—C9—H9C112 (2)
C4—C3—H3110.5 (12)H9B—C9—H9C107.9 (19)
C3—C4—C5112.84 (16)O3—N3—O2121.79 (19)
C3—C4—H4A108.2 (12)O3—N3—O1119.03 (18)
C5—C4—H4A109.2 (12)O2—N3—O1119.16 (18)
C3—C4—H4B110.0 (13)O6—N4—O5120.45 (19)
C5—C4—H4B109.7 (13)O6—N4—O4119.4 (2)
H4A—C4—H4B106.7 (17)O5—N4—O4120.12 (19)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1i0.93 (2)1.99 (2)2.868 (2)156.9 (19)
N1—H1B···O1ii0.87 (2)1.97 (2)2.772 (2)152.9 (19)
N2—H2A···O40.90 (3)2.24 (3)2.964 (3)137 (2)
N2—H2A···O2iii0.90 (3)2.48 (3)3.034 (3)120 (2)
N2—H2B···O4iii0.93 (3)2.03 (3)2.928 (3)161 (2)
N2—H2B···O3iii0.93 (3)2.59 (3)3.030 (3)109 (2)
N2—H2C···O5i0.88 (3)2.03 (3)2.910 (3)172 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O1i 0.93 (2)1.99 (2)2.868 (2)156.9 (19)
N1—H1B⋯O1ii 0.87 (2)1.97 (2)2.772 (2)152.9 (19)
N2—H2A⋯O40.90 (3)2.24 (3)2.964 (3)137 (2)
N2—H2A⋯O2iii 0.90 (3)2.48 (3)3.034 (3)120 (2)
N2—H2B⋯O4iii 0.93 (3)2.03 (3)2.928 (3)161 (2)
N2—H2B⋯O3iii 0.93 (3)2.59 (3)3.030 (3)109 (2)
N2—H2C⋯O5i 0.88 (3)2.03 (3)2.910 (3)172 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  A short history of SHELX.

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Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

3.  4-ammonio-2,2,6,6-tétraméthylpipéridinium chromate dihydrate.

Authors:  H Chebbi; A Driss
Journal:  Acta Crystallogr C       Date:  2001-12-06       Impact factor: 1.172

4.  4-Ammonio-2,2,6,6-tetra-methyl-piperidinium bis-(dihydrogen phosphate) monohydrate.

Authors:  Mohamed Lahbib Mrad; Sameh Akriche; Mohamed Rzaigui; Cherif Ben Nasr
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-03-14

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total
  3 in total

1.  Structure cristalline et analyses thermique et de surface Hirshfeld du diperchlorate de 4-aza-niumyl-2,2,6,6-tétraméthylpipéridin-1-ium.

Authors:  Hammouda Chebbi; Abdessalem Boumakhla; Mohamed Faouzi Zid; Abderrahmen Guesmi
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-09-12

2.  Crystal structure, Hirshfeld surface analysis and physicochemical characterization of bis-[4-(di-methyl-amino)-pyridinium] di-μ-chlorido-bis[di-chlorido-mercurate(II)].

Authors:  Fatma Garci; Hela Ferjani; Hammouda Chebbi; Mariem Ben Jomaa; Mohamed Faouzi Zid
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2019-10-03

3.  Crystal structure, Hirshfeld surface analysis and energy framework calculation of the first oxoanion salt containing 1,3-cyclo-hexa-nebis(methyl-ammonium): [3-(aza-niumylmeth-yl)cyclo-hex-yl]methanaminium dinitrate.

Authors:  Hammouda Chebbi; Samia Mezrigui; Meriam Ben Jomaa; Mohamed Faouzi Zid
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-06-12
  3 in total

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