Literature DB >> 24940220

(5E)-1-Benzyl-5-(3,3,3-tri-chloro-2-oxo-propyl-idene)pyrrolidin-2-one.

Alex Fabiani Claro Flores1, Darlene Correia Flores1, Juliano Rosa de Menezes Vicenti1, Lucas Pizzuti2, Patrick Teixeira Campos3.   

Abstract

In the crystal structure of the title compound, C14H12Cl3NO2, no classical hydrogen-bonding inter-actions are observed. The methyl-ene fragments of the benzyl groups participate in non-classic hydrogen-bond inter-actions with the carbonyl O atoms of neighboring mol-ecules, generating co-operative centrosymmetric dimers with R 5 (5)(10) ring motifs. The overall mol-ecular arrangement in the unit cell seems to be highly influenced by secondary non-covalent weak C-Cl⋯π [Cl⋯Cg(phenyl ring) = 3.732 (2) Å] and C-O⋯π [O⋯Cg(pyrrolidine ring) = 2.985 (2) Å] contacts.

Entities:  

Year:  2014        PMID: 24940220      PMCID: PMC4051069          DOI: 10.1107/S160053681400751X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound, see: Flores et al. (2008 ▶). For pharmacological effects, see: Van der Schyf et al. (2006 ▶). For non-classical weak contacts, see: Irving & Irving (1994 ▶); Bissantz et al. (2010 ▶). For related structures, see: Bandeira et al. (2013 ▶); de Oliveira et al. (2012 ▶); de Bittencourt et al. (2014 ▶).

Experimental

Crystal data

C14H12Cl3NO2 M = 332.60 Monoclinic, a = 15.7822 (5) Å b = 5.8465 (2) Å c = 17.4107 (5) Å β = 105.885 (1)° V = 1545.15 (8) Å3 Z = 4 Mo Kα radiation μ = 0.59 mm−1 T = 293 K 0.83 × 0.23 × 0.19 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: gaussian (XPREP; Bruker, 2009 ▶) T min = 0.814, T max = 1.000 21458 measured reflections 5069 independent reflections 2436 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.217 S = 1.00 5069 reflections 181 parameters H-atom parameters constrained Δρmax = 0.43 e Å−3 Δρmin = −0.51 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S160053681400751X/zq2220sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681400751X/zq2220Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S160053681400751X/zq2220Isup3.cml CCDC reference: 740177 Additional supporting information: crystallographic information; 3D view; checkCIF report
C14H12Cl3NO2F(000) = 680
Mr = 332.60Dx = 1.430 Mg m3
Monoclinic, P21/nMelting point: 361 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 15.7822 (5) ÅCell parameters from 3113 reflections
b = 5.8465 (2) Åθ = 2.4–21.5°
c = 17.4107 (5) ŵ = 0.59 mm1
β = 105.885 (1)°T = 293 K
V = 1545.15 (8) Å3Block, yellow
Z = 40.83 × 0.23 × 0.19 mm
Bruker APEXII CCD diffractometer5069 independent reflections
Radiation source: fine-focus sealed tube2436 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.033
φ and ω scansθmax = 31.5°, θmin = 2.7°
Absorption correction: gaussian (XPREP; Bruker, 2009)h = −23→23
Tmin = 0.814, Tmax = 1k = −8→3
21458 measured reflectionsl = −25→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.217H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.1095P)2 + 0.2217P] where P = (Fo2 + 2Fc2)/3
5069 reflections(Δ/σ)max < 0.001
181 parametersΔρmax = 0.43 e Å3
0 restraintsΔρmin = −0.51 e Å3
Experimental. Gaussian absorption correction based on the face-indexed crystal size
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl11−0.04344 (5)−0.0759 (2)0.73859 (6)0.0958 (3)
Cl120.01375 (6)0.32178 (15)0.83385 (6)0.0921 (3)
Cl130.03185 (7)−0.11995 (17)0.90926 (6)0.0955 (3)
O710.50426 (12)0.2290 (4)0.95046 (11)0.0688 (5)
N10.35352 (12)0.2022 (3)0.92101 (10)0.0485 (5)
O210.13827 (13)−0.1294 (4)0.75824 (13)0.0766 (6)
C90.30299 (15)0.3271 (4)1.03807 (14)0.0517 (6)
C40.28593 (15)0.0825 (4)0.87105 (13)0.0473 (5)
C20.13065 (16)−0.0046 (4)0.81150 (14)0.0541 (6)
C30.20017 (17)0.1159 (4)0.86770 (14)0.0537 (6)
H30.18580.21950.90270.064*
C80.34165 (19)0.3933 (4)0.97121 (15)0.0573 (6)
H810.30350.50580.93790.069*
H820.39840.46530.99390.069*
C60.42339 (17)−0.0584 (5)0.85719 (15)0.0584 (6)
H620.4489−0.19740.88430.070*
H610.4507−0.02630.81480.070*
C50.32443 (16)−0.0833 (4)0.82383 (14)0.0507 (5)
H510.3062−0.04550.76740.061*
H520.3060−0.23840.83080.061*
C100.32564 (18)0.1269 (5)1.08009 (16)0.0614 (7)
H100.36540.02751.06670.074*
C70.43644 (17)0.1369 (4)0.91455 (14)0.0536 (6)
C110.2900 (2)0.0712 (7)1.14227 (18)0.0810 (9)
H110.3059−0.06531.16990.097*
C140.2441 (2)0.4725 (6)1.0591 (2)0.0778 (8)
H140.22730.60871.03150.093*
C130.2094 (2)0.4110 (8)1.1238 (2)0.0972 (12)
H130.17040.50881.13890.117*
C10.03650 (17)0.0294 (5)0.82250 (16)0.0615 (6)
C120.2326 (2)0.2126 (8)1.1629 (2)0.0930 (11)
H120.20890.17291.20440.112*
U11U22U33U12U13U23
Cl110.0520 (4)0.1369 (8)0.0932 (6)−0.0116 (4)0.0110 (4)−0.0291 (5)
Cl120.0838 (6)0.0785 (6)0.1221 (7)0.0163 (4)0.0416 (5)−0.0080 (5)
Cl130.0997 (7)0.1099 (7)0.0892 (6)−0.0161 (5)0.0465 (5)0.0130 (5)
O710.0531 (10)0.0804 (13)0.0728 (11)−0.0168 (9)0.0169 (9)−0.0078 (10)
N10.0497 (10)0.0571 (11)0.0417 (9)−0.0128 (8)0.0175 (8)−0.0064 (8)
O210.0558 (11)0.0922 (15)0.0809 (13)−0.0063 (10)0.0169 (10)−0.0388 (11)
C90.0454 (12)0.0599 (14)0.0497 (12)−0.0087 (10)0.0130 (10)−0.0156 (11)
C40.0522 (13)0.0517 (12)0.0396 (11)−0.0085 (10)0.0155 (9)−0.0008 (9)
C20.0508 (13)0.0580 (14)0.0547 (14)−0.0029 (11)0.0166 (11)−0.0057 (11)
C30.0545 (13)0.0597 (14)0.0491 (13)−0.0055 (11)0.0176 (11)−0.0090 (10)
C80.0633 (15)0.0533 (13)0.0576 (14)−0.0138 (11)0.0205 (12)−0.0080 (11)
C60.0532 (14)0.0696 (16)0.0537 (14)0.0010 (11)0.0167 (11)−0.0030 (12)
C50.0551 (13)0.0542 (13)0.0441 (11)−0.0039 (10)0.0158 (10)−0.0027 (10)
C100.0568 (15)0.0748 (17)0.0579 (14)−0.0009 (12)0.0245 (12)−0.0040 (13)
C70.0545 (14)0.0640 (14)0.0433 (12)−0.0096 (11)0.0150 (10)0.0011 (10)
C110.088 (2)0.101 (2)0.0599 (17)−0.0077 (18)0.0312 (16)0.0037 (16)
C140.0735 (19)0.081 (2)0.082 (2)0.0109 (15)0.0257 (16)−0.0153 (16)
C130.075 (2)0.140 (4)0.089 (2)0.013 (2)0.0438 (19)−0.033 (2)
C10.0522 (14)0.0691 (16)0.0661 (16)−0.0036 (12)0.0208 (12)−0.0052 (13)
C120.088 (2)0.131 (3)0.074 (2)−0.013 (2)0.0459 (19)−0.012 (2)
Cl11—C11.760 (3)C8—H820.9700
Cl12—C11.769 (3)C6—C71.494 (3)
Cl13—C11.764 (3)C6—C51.517 (4)
O71—C71.208 (3)C6—H620.9700
N1—C41.370 (3)C6—H610.9700
N1—C71.397 (3)C5—H510.9700
N1—C81.462 (3)C5—H520.9700
O21—C21.212 (3)C10—C111.389 (4)
C9—C101.375 (4)C10—H100.9300
C9—C141.381 (4)C11—C121.345 (5)
C9—C81.505 (3)C11—H110.9300
C4—C31.353 (3)C14—C131.426 (5)
C4—C51.503 (3)C14—H140.9300
C2—C31.439 (4)C13—C121.345 (6)
C2—C11.562 (3)C13—H130.9300
C3—H30.9300C12—H120.9300
C8—H810.9700
C4—N1—C7113.14 (19)C6—C5—H51110.8
C4—N1—C8124.4 (2)C4—C5—H52110.8
C7—N1—C8122.2 (2)C6—C5—H52110.8
C10—C9—C14118.6 (2)H51—C5—H52108.8
C10—C9—C8121.9 (2)C9—C10—C11120.8 (3)
C14—C9—C8119.4 (3)C9—C10—H10119.6
C3—C4—N1123.4 (2)C11—C10—H10119.6
C3—C4—C5128.2 (2)O71—C7—N1123.6 (2)
N1—C4—C5108.4 (2)O71—C7—C6128.8 (2)
O21—C2—C3126.8 (2)N1—C7—C6107.6 (2)
O21—C2—C1117.9 (2)C12—C11—C10120.7 (4)
C3—C2—C1115.4 (2)C12—C11—H11119.7
C4—C3—C2121.8 (2)C10—C11—H11119.7
C4—C3—H3119.1C9—C14—C13119.1 (3)
C2—C3—H3119.1C9—C14—H14120.5
N1—C8—C9114.3 (2)C13—C14—H14120.5
N1—C8—H81108.7C12—C13—C14120.5 (3)
C9—C8—H81108.7C12—C13—H13119.8
N1—C8—H82108.7C14—C13—H13119.8
C9—C8—H82108.7C2—C1—Cl11110.10 (18)
H81—C8—H82107.6C2—C1—Cl13107.82 (19)
C7—C6—C5105.6 (2)Cl11—C1—Cl13110.45 (15)
C7—C6—H62110.6C2—C1—Cl12111.45 (18)
C5—C6—H62110.6Cl11—C1—Cl12108.04 (16)
C7—C6—H61110.6Cl13—C1—Cl12109.00 (15)
C5—C6—H61110.6C13—C12—C11120.3 (3)
H62—C6—H61108.8C13—C12—H12119.8
C4—C5—C6104.88 (19)C11—C12—H12119.8
C4—C5—H51110.8
C7—N1—C4—C3179.4 (2)C8—N1—C7—O711.3 (4)
C8—N1—C4—C3−5.8 (3)C4—N1—C7—C6−3.7 (3)
C7—N1—C4—C5−0.5 (3)C8—N1—C7—C6−178.6 (2)
C8—N1—C4—C5174.3 (2)C5—C6—C7—O71−173.7 (3)
N1—C4—C3—C2176.7 (2)C5—C6—C7—N16.2 (3)
C5—C4—C3—C2−3.4 (4)C9—C10—C11—C12−0.2 (5)
O21—C2—C3—C4−6.5 (4)C10—C9—C14—C130.4 (4)
C1—C2—C3—C4172.5 (2)C8—C9—C14—C13−178.5 (3)
C4—N1—C8—C967.9 (3)C9—C14—C13—C12−1.0 (6)
C7—N1—C8—C9−117.8 (2)O21—C2—C1—Cl11−13.2 (3)
C10—C9—C8—N138.3 (3)C3—C2—C1—Cl11167.62 (19)
C14—C9—C8—N1−142.8 (3)O21—C2—C1—Cl13107.3 (3)
C3—C4—C5—C6−175.6 (2)C3—C2—C1—Cl13−71.8 (3)
N1—C4—C5—C64.3 (2)O21—C2—C1—Cl12−133.1 (2)
C7—C6—C5—C4−6.3 (2)C3—C2—C1—Cl1247.8 (3)
C14—C9—C10—C110.2 (4)C14—C13—C12—C111.0 (6)
C8—C9—C10—C11179.1 (3)C10—C11—C12—C13−0.4 (6)
C4—N1—C7—O71176.2 (2)
D—H···AD—HH···AD···AD—H···A
C8—H82···O71i0.972.383.292 (3)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C8—H82⋯O71i 0.972.383.292 (3)156

Symmetry code: (i) .

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