Literature DB >> 22905007

2-(1,2,3,4-Tetra-hydro-naphthalen-1-yl-idene)hydrazinecarbothio-amide.

Adriano Bof de Oliveira, Cecília Santos Silva, Bárbara Regina Santos Feitosa, Christian Näther, Inke Jess.   

Abstract

The mol-ecular structure of the title compound, C(11)H(13)N(3)S, is not planar: the maximum deviation from the mean plane of the non-H atoms is 0.521 (2) Å for an aliphatic C atom, which corresponds to an envelope conformation for the non-aromatic ring. The hydrazinecarbothio-amide substituent and the benzene ring have maximum deviations from the mean planes through the non-H atoms of 0.0288 (16) and 0.0124 (27) Å, respectively, and the dihedral angle between the two planes is 8.84 (13)°. In the crystal, mol-ecules are linked into chains along [1[Formula: see text]0] by pairs of N-H⋯S hydrogen bonds between mol-ecules related by centres of symmetry.

Entities:  

Year:  2012        PMID: 22905007      PMCID: PMC3415020          DOI: 10.1107/S1600536812033302

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound and the pharmacological activity of ketonethio­semicrabazones, see: Thanigaimalai et al. (2011 ▶). For crystal structures of other thio­semicarbazone derivatives with pharmacological activity, see: Pederzolli et al. (2011 ▶); Bittencourt et al. (2012 ▶).

Experimental

Crystal data

C11H13N3S M = 219.30 Monoclinic, a = 15.4388 (11) Å b = 5.5781 (3) Å c = 26.338 (2) Å β = 102.940 (6)° V = 2210.6 (3) Å3 Z = 8 Mo Kα radiation μ = 0.26 mm−1 T = 293 K 0.3 × 0.2 × 0.2 mm

Data collection

Stoe IPDS-1 diffractometer 7673 measured reflections 2402 independent reflections 2019 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.126 S = 1.08 2402 reflections 136 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.21 e Å−3 Data collection: X-AREA (Stoe & Cie, 2008 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2008 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812033302/fy2063sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812033302/fy2063Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812033302/fy2063Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H13N3SZ = 8
Mr = 219.30F(000) = 928
Monoclinic, C2/cDx = 1.318 Mg m3
Hall symbol: -C 2ycMo Kα radiation, λ = 0.71073 Å
a = 15.4388 (11) ŵ = 0.26 mm1
b = 5.5781 (3) ÅT = 293 K
c = 26.338 (2) ÅBlock, yellow
β = 102.940 (6)°0.3 × 0.2 × 0.2 mm
V = 2210.6 (3) Å3
Stoe IPDS-1 diffractometer2019 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tube, Stoe IPDS-1Rint = 0.043
Graphite monochromatorθmax = 27.0°, θmin = 3.4°
φ scansh = −19→19
7673 measured reflectionsk = −6→7
2402 independent reflectionsl = −29→33
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.126H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0611P)2 + 0.6719P] where P = (Fo2 + 2Fc2)/3
2402 reflections(Δ/σ)max < 0.001
136 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.29958 (11)0.7852 (3)0.39372 (7)0.0547 (4)
C20.21106 (12)0.8320 (4)0.40609 (8)0.0651 (5)
H2A0.21870.93980.43570.078*
H2B0.18690.68250.41570.078*
C30.14622 (13)0.9414 (4)0.36024 (9)0.0748 (6)
H3A0.13360.82710.33180.090*
H3B0.09090.97790.37020.090*
C40.18397 (16)1.1667 (4)0.34255 (10)0.0803 (6)
H4A0.14381.22550.31130.096*
H4B0.18821.28830.36930.096*
C50.27389 (14)1.1280 (3)0.33150 (7)0.0647 (5)
C60.30605 (19)1.2810 (4)0.29776 (9)0.0837 (6)
H60.27091.40780.28210.100*
C70.3882 (2)1.2473 (5)0.28746 (10)0.0920 (7)
H70.40871.35280.26540.110*
C80.43993 (17)1.0605 (5)0.30923 (10)0.0881 (7)
H80.49501.03570.30130.106*
C90.41110 (15)0.9082 (4)0.34300 (9)0.0761 (6)
H90.44720.78200.35810.091*
C100.32796 (12)0.9407 (3)0.35500 (7)0.0583 (4)
N10.35565 (10)0.6249 (3)0.41497 (6)0.0566 (4)
N20.33609 (9)0.4805 (3)0.45306 (6)0.0580 (4)
H1N20.28610.48180.46460.070*
C110.39552 (11)0.3092 (3)0.47378 (7)0.0540 (4)
N30.46628 (10)0.2886 (3)0.45383 (7)0.0680 (5)
H1N30.50630.17310.46360.082*
H2N30.47190.40750.43230.082*
S10.37784 (3)0.13624 (10)0.52278 (2)0.0675 (2)
U11U22U33U12U13U23
C10.0598 (9)0.0488 (9)0.0579 (9)0.0039 (7)0.0182 (7)0.0021 (7)
C20.0643 (10)0.0616 (11)0.0741 (12)0.0111 (8)0.0254 (9)0.0117 (9)
C30.0649 (11)0.0767 (13)0.0823 (14)0.0139 (10)0.0152 (10)0.0063 (11)
C40.0913 (14)0.0677 (13)0.0816 (14)0.0220 (11)0.0186 (11)0.0137 (11)
C50.0867 (13)0.0505 (10)0.0566 (10)0.0006 (9)0.0153 (9)0.0002 (8)
C60.1232 (19)0.0616 (12)0.0656 (12)−0.0012 (12)0.0197 (12)0.0117 (10)
C70.128 (2)0.0829 (16)0.0730 (14)−0.0202 (15)0.0384 (14)0.0123 (12)
C80.0951 (16)0.0975 (17)0.0812 (15)−0.0122 (14)0.0396 (13)0.0123 (13)
C90.0788 (13)0.0780 (14)0.0779 (13)0.0020 (10)0.0310 (11)0.0133 (11)
C100.0706 (10)0.0515 (9)0.0546 (9)−0.0013 (8)0.0178 (8)0.0023 (8)
N10.0617 (8)0.0545 (8)0.0578 (8)0.0057 (6)0.0226 (6)0.0075 (7)
N20.0561 (8)0.0595 (9)0.0641 (8)0.0119 (6)0.0257 (7)0.0127 (7)
C110.0531 (8)0.0519 (9)0.0604 (10)0.0071 (7)0.0199 (7)0.0017 (7)
N30.0628 (9)0.0686 (10)0.0820 (11)0.0186 (7)0.0362 (8)0.0212 (8)
S10.0622 (3)0.0737 (4)0.0741 (3)0.0200 (2)0.0316 (2)0.0242 (2)
C1—N11.282 (2)C6—H60.9300
C1—C101.478 (2)C7—C81.359 (4)
C1—C21.497 (2)C7—H70.9300
C2—C31.514 (3)C8—C91.374 (3)
C2—H2A0.9700C8—H80.9300
C2—H2B0.9700C9—C101.401 (3)
C3—C41.503 (3)C9—H90.9300
C3—H3A0.9700N1—N21.3722 (19)
C3—H3B0.9700N2—C111.352 (2)
C4—C51.497 (3)N2—H1N20.8899
C4—H4A0.9700C11—N31.319 (2)
C4—H4B0.9700C11—S11.6818 (17)
C5—C101.393 (3)N3—H1N30.8900
C5—C61.401 (3)N3—H2N30.8900
C6—C71.368 (4)
N1—C1—C10115.77 (15)C7—C6—H6119.4
N1—C1—C2125.91 (16)C5—C6—H6119.4
C10—C1—C2118.28 (15)C8—C7—C6120.3 (2)
C1—C2—C3111.69 (16)C8—C7—H7119.8
C1—C2—H2A109.3C6—C7—H7119.8
C3—C2—H2A109.3C7—C8—C9120.1 (2)
C1—C2—H2B109.3C7—C8—H8119.9
C3—C2—H2B109.3C9—C8—H8119.9
H2A—C2—H2B107.9C8—C9—C10120.8 (2)
C4—C3—C2110.56 (19)C8—C9—H9119.6
C4—C3—H3A109.5C10—C9—H9119.6
C2—C3—H3A109.5C5—C10—C9119.00 (18)
C4—C3—H3B109.5C5—C10—C1120.42 (16)
C2—C3—H3B109.5C9—C10—C1120.53 (17)
H3A—C3—H3B108.1C1—N1—N2119.39 (14)
C5—C4—C3112.39 (17)C11—N2—N1118.00 (13)
C5—C4—H4A109.1C11—N2—H1N2115.5
C3—C4—H4A109.1N1—N2—H1N2126.4
C5—C4—H4B109.1N3—C11—N2116.66 (15)
C3—C4—H4B109.1N3—C11—S1123.15 (13)
H4A—C4—H4B107.9N2—C11—S1120.19 (12)
C10—C5—C6118.5 (2)C11—N3—H1N3122.2
C10—C5—C4120.74 (17)C11—N3—H2N3113.4
C6—C5—C4120.78 (19)H1N3—N3—H2N3124.3
C7—C6—C5121.2 (2)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···S1i0.892.713.5606 (14)161
N3—H1N3···S1ii0.892.453.3351 (16)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H1N2⋯S1i 0.892.713.5606 (14)161
N3—H1N3⋯S1ii 0.892.453.3351 (16)171

Symmetry codes: (i) ; (ii) .

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2.  Ketonethiosemicarbazones: structure-activity relationships for their melanogenesis inhibition.

Authors:  Pillaiyar Thanigaimalai; Ki-Cheul Lee; Vinay K Sharma; Eunmiri Roh; Youngsoo Kim; Sang-Hun Jung
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3.  1-(5-Bromo-2-oxoindolin-3-yl-idene)thio-semicarbazide acetonitrile monosolvate.

Authors:  Fernanda Rosi Soares Pederzolli; Leandro Bresolin; Vanessa Santana Carratu; Aline Locatelli; Adriano Bof de Oliveira
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-25

4.  1-(2,4,6-Trioxo-1,3-diazinan-5-yl-idene)thio-semicarbazide.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-01-25

2.  2-(5-Chloro-2-oxoindolin-3-yl-idene)hydrazinecarbo-thio-amide.

Authors:  Viviane Conceição Duarte de Bittencourt; Juliano Rosa de Menezes Vicenti; Jecika Maciel Velasques; Priscilla Jussiane Zambiazi; Vanessa Carratu Gervini
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-12-14

3.  Crystal structure of N-ethyl-2-(1,2,3,4-tetra-hydro-naphthalen-1-yl-idene)hydrazinecarbo-thio-amide.

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4.  1-(2H-1,3-Benzodioxol-5-yl)ethanone thio-semicarbazone.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-04-05

5.  (5E)-1-Benzyl-5-(3,3,3-tri-chloro-2-oxo-propyl-idene)pyrrolidin-2-one.

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6.  2-(5-Iodo-2-oxoindolin-3-yl-idene)hydrazinecarbo-thio-amide including an unknown solvate.

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-05-17

7.  Crystal structure of the charge-transfer complex 2-(1,2,3,4-tetra-hydro-naph-thal-en-1-yl-idene)hydrazinecarbo-thio-amide-pyrazine-2,3,5,6-tetra-carbo-nitrile (2/1).

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